1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctaagtaaagttctgttcttgactgaatttgttaggacaagcataagaatacttaagtttattttttaagacaatttttttttcatttttgtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAG
species | Physcomitrella patens |
transcript | PP1S269_15V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTG TACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAAEST: gi|162194348|gb|FC369532.1|FC369532
genomic: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTGgtattaatcc ... gtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAA
EST: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTG TACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGA-EST: gi|100376652|gb|BY949399.1|BY949399
genomic: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTGgtattaatcc ... gtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAA
EST: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTG TACAGGAGGAGTGGTGTTGGCTACCAGGGACGGTCGCATCGTCTTGGAGAAEST: gi|208396033|gb|DC915793.1|DC915793
genomic: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTGgtattaatcc ... gtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAA
EST: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTG TACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAA
genomic: GAGCATTTCCTTCCTGGGCCACCAGGGTCATCTAACCACGGCTCTTCCTGgtattaatcc ... gtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAA
agaatacttaagtttattttttaagacaatttttttttcatttttgtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAG
tttttttttcattttt CT-rich tract
ttaagtttatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaagtaaagttctgttcttgactgaatttgttaggacaagcataagaatacttaagtttattttttaagacaatttttttttcatttttgtggctacagTACAGGAGGAGTGGTGTTGGCTACCAAGGACGGTCGCATCGTCTTGGAGAATACTTTAGATGCACGCTTGGAAGTTGTGTTCAAGCAGCAGTTGCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG