1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tccaagtacttctcttaatttaattccaacattggatgcaagttcattactttgaatgtctcatgtcgactgaacgatttttttgtactttttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGATATGTGAGAATCTGATAAAAGGAGCACATGACCCACGCATAGAGGGCG
species | Physcomitrella patens |
transcript | PP1S25_21V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCAGAGAGTGAAGAAAGGA-GCGTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGC-GGTTCATGCAAGGGTTATCEST: gi|162257211|gb|FC433087.1|FC433087
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATC
EST: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGEST: gi|100436732|gb|BY979498.1|BY979498
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
EST: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATNAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGEST: gi|162197312|gb|FC372274.1|FC372274
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATG
EST: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGEST: gi|162168391|gb|FC344705.1|FC344705
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
EST: GGCAGAGAGTGAAGAAAGGAAGCCTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGEST: gi|162181980|gb|FC356851.1|FC356851
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
EST: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGEST: gi|162153222|gb|FC329004.1|FC329004
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
EST: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAG ATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
genomic: GGCAGAGAGTGAAGAAAGGAAGCGTGTTGACGATAAAGCTTTCAGGCGAGgtgagttaag ... tttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAG
attactttgaatgtctcatgtcgactgaacgatttttttgtactttttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGATATGTGAGAATCTGATAAAAGGAGCACATGACCCACGCATAGAGGGCG
tttttttgtacttttt CT-rich tract
atttttttgtactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaagtacttctcttaatttaattccaacattggatgcaagttcattactttgaatgtctcatgtcgactgaacgatttttttgtactttttccttcagATTGCAGAGCAGTACCAAGGCCGGTTCATGCAAGGGTTATCCTTGCCACAGATATGTGAGAATCTGATAAAAGGAGCACATGACCCACGCATAGAGGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA