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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaccactcctgtaccatcgtctctgcattccattcttttctctctgtctaagctttgaaaatgaagtctgaaaaaccttgcgaaaagttatctctttttcttgtttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAAGAGTGGTGGCGTATCATGGACTATTTGTCGTACATCCCCGAGAGCACCC

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384851|gb|DC907464.1|DC907464
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67718671|gb|BJ968930.1|BJ968930
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208377750|gb|DC940862.1|DC940862
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208391105|gb|DC938135.1|DC938135
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208374471|gb|DC941200.1|DC941200
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208358178|gb|DC939374.1|DC939374
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67717845|gb|BJ968104.1|BJ968104
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208387137|gb|DC941309.1|DC941309
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208364305|gb|DC935576.1|DC935576
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208364257|gb|DC935528.1|DC935528
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208393656|gb|DC907807.1|DC907807
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67712527|gb|BJ965976.1|BJ965976
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208390335|gb|DC929283.1|DC929283
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208372156|gb|DC936934.1|DC936934
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67704770|gb|BJ965003.1|BJ965003
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208390550|gb|DC937482.1|DC937482
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208363794|gb|DC943251.1|DC943251
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67717320|gb|BJ967579.1|BJ967579
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208357002|gb|DC930032.1|DC930032
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208353748|gb|DC938773.1|DC938773
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208370371|gb|DC931783.1|DC931783
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208366720|gb|DC931377.1|DC931377
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208362608|gb|DC931029.1|DC931029
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAN                         TTCCCANATGTGATTCANGCANTGAANCCCAACCCC
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCC
EST: gi|208353668|gb|DC929711.1|DC929711
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208371487|gb|DC931838.1|DC931838
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208391441|gb|DC937589.1|DC937589
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208374632|gb|DC931971.1|DC931971
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208356923|gb|DC942669.1|DC942669
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208394247|gb|DC933915.1|DC933915
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCANATGTGATTCACGCAATGAANCCCAACCCCNAATCNAANGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208387954|gb|DC932878.1|DC932878
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208366660|gb|DC931317.1|DC931317
EST:     GCATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67712529|gb|BJ965978.1|BJ965978
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67719593|gb|BJ969852.1|BJ969852
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAGCCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67709324|gb|BJ965140.1|BJ965140
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208379536|gb|DC911147.1|DC911147
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208369236|gb|DC936051.1|DC936051
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208367245|gb|DC939817.1|DC939817
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|18346805|gb|BJ178850.1|BJ178850
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208377086|gb|DC936818.1|DC936818
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208358975|gb|DC939231.1|DC939231
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208389713|gb|DC933615.1|DC933615
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208346392|gb|DC905297.1|DC905297
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGACGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67717657|gb|BJ967916.1|BJ967916
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208374745|gb|DC932028.1|DC932028
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208377653|gb|DC932189.1|DC932189
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208391256|gb|DC933517.1|DC933517
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67720025|gb|BJ970284.1|BJ970284
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67716758|gb|BJ967018.1|BJ967018
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67718893|gb|BJ969152.1|BJ969152
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208346674|gb|DC913320.1|DC913320
EST:     ACATGGTGGGCAATAACACGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208367164|gb|DC935964.1|DC935964
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67704422|gb|BJ964655.1|BJ964655
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67716749|gb|BJ967009.1|BJ967009
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208353664|gb|DC929707.1|DC929707
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208393315|gb|DC942455.1|DC942455
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208387871|gb|DC929215.1|DC929215
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208376966|gb|DC936772.1|DC936772
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208394402|gb|DC942562.1|DC942562
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67719757|gb|BJ970016.1|BJ970016
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208362187|gb|DC935629.1|DC935629
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|18358219|gb|BJ190278.1|BJ190278
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208383981|gb|DC907372.1|DC907372
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67709790|gb|BJ965606.1|BJ965606
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208390300|gb|DC942037.1|DC942037
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208357017|gb|DC942707.1|DC942707
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208375476|gb|DC940502.1|DC940502
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|208372368|gb|DC936484.1|DC936484
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67719949|gb|BJ970208.1|BJ970208
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|67717944|gb|BJ968203.1|BJ968203
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
EST: gi|18344805|gb|BJ176846.1|BJ176846
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCA
EST: gi|208389909|gb|DC937740.1|DC937740
EST:     ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAG                         TTCCCAGATGTGATTCGCGCAATGAAGCCCAACCCCAAATCGAACGTGCAA
genomic: ACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 45

AGACCCTCGAGGATTTGCCGTGAAGATGTACACGCGGGAAGGAAACTTCGACATGGTGGGCAATAACATGCCTGTGTTCTTCGTGCGCGACGCCATGCAGgtaatcacca ... tttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAAGAGTGGTGGCGTATCATGGACTATTTGTCGTACATCCCCGAGAGCACCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgaagtctgaaaaaccttgcgaaaagttatctctttttcttgtttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAAGAGTGGTGGCGTATCATGGACTATTTGTCGTACATCCCCGAGAGCACCC
                             ttatctctttttcttg  CT-rich tract
                        aaaagttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatcaccactcctgtaccatcgtctctgcattccattcttttctctctgtctaagctttgaaaatgaagtctgaaaaaccttgcgaaaagttatctctttttcttgtttggtacagTTCCCAGATGTGATTCACGCAATGAAGCCCAACCCCAAATCGAACGTGCAAGAGTGGTGGCGTATCATGGACTATTTGTCGTACATCCCCGAGAGCACCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA