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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcggctgaatattcttgctcctgcagtgttctctctaattgtttacttggcccgtcaaaatatcgtctgattagtaagtgttcttacattcaaatgatggctgcttgtcctttttgtttttagtgaaggttttgaatctgggttttagtaatcggttggttctgcttacagGCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTAAGGGATCAACTGAACAAGGGTATTGTACCTCTGGACATCGATTCGTATT

Basic information

species Physcomitrella patens
transcript PP1S256_73V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S256_73V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ12967 (Selaginella moellendorffii), 3'ss of exon 2
gtttgtcggctgaatattcttgctcctgcagtgttctctctaattgtttacttggcccgtcaaaatatcgtctgattagtaagtgttcttacattcaaatgatggctgcttgtcctttttgtttttagtgaaggttttgaatctgggttttagtaatcggttggttctgcttacagGCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTAAGGGATCAACTGAACAAGGGTATTGTACCTCTGGACATCGATTCGTATT
                                                                                                           |  |||  || ||  ||||          |    ||| |   | |||  | |      || |  | ||||||||||| ||||||||||| ||||| || ||||||||  | |||  |||| |||| || || |||   || || || || |  || || |||    | |
-----------------------------------------------------------------------------------------------------------gtctgtgattctttgtttt--------cctcttctcttgacgtgagtctttg------tcggtgtccagGCGGAAGGAATTTTCAGAATAAACGCCGAAAACAGCCACGAAGAAATCGTACGGGAGCAGCTCAACCGTGGGATCGTCCCACACGATATTGATCTTCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162187401|gb|FC362623.1|FC362623
EST:     CTATCCTACTACTGATGCAAGAGAGGCTATATAATCAAGGAGGCCTGAAG                         GCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTA
genomic: CTATCCTACTACTGATGCAAGAGAGGCTATATAATCAAGGAGGCCTGAAGgtttgtcggc ... ctgcttacagGCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTA
EST: gi|67576682|gb|BJ949506.1|BJ949506
EST:     CTATCCTACTACTGATGCAAGAGAGGCTATATAATCAAGGAGGCCTGAAG                         GCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTA
genomic: CTATCCTACTACTGATGCAAGAGAGGCTATATAATCAAGGAGGCCTGAAGgtttgtcggc ... ctgcttacagGCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttagtgaaggttttgaatctgggttttagtaatcggttggttctgcttacagGCGGAAGGTATTTTCAGAATCAACGCAGAGAACAGCCATCACGAACACGTAAGGGATCAACTGAACAAGGGTATTGTACCTCTGGACATCGATTCGTATT
                                           ttctgctt  CT-rich tract
                          ttttagtaat  TA-rich tract