1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttaattgcgtttcttctcttgacatttggaacatacgtcatcaagctttttgcacagtaacttacatctgttgacatctagatctccgtattaagattcatggtggattgtaggatgcatgtcgaatgtttgtattgtggtggtgtgaaaataacgttttcatgctatggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCAGCAAAAAG
species | Physcomitrella patens |
transcript | PP1S250_15V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAG GTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCEST: gi|208378131|gb|DC902604.1|DC902604
genomic: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgc ... tggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
EST: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAG GTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCEST: gi|208387424|gb|DC949209.1|DC949209
genomic: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgc ... tggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
EST: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAG GTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCEST: gi|100428997|gb|BY977888.1|BY977888
genomic: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgc ... tggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
EST: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAG GTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCEST: gi|208361368|gb|DC935083.1|DC935083
genomic: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgc ... tggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
EST: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAG GTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
genomic: ATTTCTTCAGCAACGTCTGTGAGCTGGATTTGGTCTTCAACTTCCACAAGgtttaattgc ... tggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACC
cgaatgtttgtattgtggtggtgtgaaaataacgttttcatgctatggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCAGCAAAAAG
aaataac putative branch site (score: 4)
tgaaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaattgcgtttcttctcttgacatttggaacatacgtcatcaagctttttgcacagtaacttacatctgttgacatctagatctccgtattaagattcatggtggattgtaggatgcatgtcgaatgtttgtattgtggtggtgtgaaaataacgttttcatgctatggttgacagGTGTATCTGATATTAGACGAATTCATTCTCGCTGGAGAATTGCAAGAAACCAGCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA