1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgagttacttcttcttgttcagctgattgcggttttgtactttttggaatctgggtctgagattgcttgctcagtggctttctatcaaatatcattgcttgacttgtttggttggtgggtttgatggagatttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATGTTTCTAGGCCTGACAAGATAAGTGCTGCCGAG
species | Physcomitrella patens |
transcript | PP1S243_67V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|208371413|gb|DC955749.1|DC955749
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|37836792|gb|BJ594800.1|BJ594800
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|37832462|gb|BJ590474.1|BJ590474
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|37845653|gb|BJ603661.1|BJ603661
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|208376580|gb|DC952307.1|DC952307
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|208367978|gb|DC951003.1|DC951003
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|162164770|gb|FC340492.1|FC340492
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|67724576|gb|BJ974835.1|BJ974835
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|208398297|gb|DC916436.1|DC916436
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|37851697|gb|BJ609705.1|BJ609705
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|208387168|gb|DC945467.1|DC945467
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|37832812|gb|BJ590824.1|BJ590824
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATEST: gi|162186124|gb|FC361328.1|FC361328
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
EST: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAG GTATGTACAGCAAAGATGATCTTAAGTGAGGAAGTTGATCTAGAAGATTAT
genomic: AGATTGAATTTCCACTGCCTGACAGGAGACAAAAGCGTATGGTCTTCCAGgtacgagtta ... atttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTAT
tcaaatatcattgcttgacttgtttggttggtgggtttgatggagatttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATGTTTCTAGGCCTGACAAGATAAGTGCTGCCGAG
tatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagttacttcttcttgttcagctgattgcggttttgtactttttggaatctgggtctgagattgcttgctcagtggctttctatcaaatatcattgcttgacttgtttggttggtgggtttgatggagatttgaacagGTATGTACAGCAAAGATGAACTTAAGTGAGGAAGTTGATCTAGAAGATTATGTTTCTAGGCCTGACAAGATAAGTGCTGCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC