1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgcggatcagagtaacgttactagttgatgcatttggagatcacattcttgcctaccgactactttttctcttacaattgctcttggggctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAGCAGCTGGTGGTGCTGTTCTATTGGGTTTGGTTGGGCTCGGTATTCTTC
species | Physcomitrella patens |
transcript | PP1S241_31V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAG GGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAEST: gi|67709776|gb|BJ965592.1|BJ965592
genomic: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAGgtttgcacct ... ctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
EST: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAG GGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAEST: gi|162257847|gb|FC434045.1|FC434045
genomic: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAGgtttgcacct ... ctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
EST: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAG GGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAEST: gi|162169401|gb|FC345757.1|FC345757
genomic: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAGgtttgcacct ... ctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
EST: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAG GGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAEST: gi|100401075|gb|BY973089.1|BY973089
genomic: CTGTATCAAGAGAGAATTACGAGAAGTATGGTCACCCCGATGGACGCCAGgtttgcacct ... ctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
EST: ATGGTCACCCCGATGGACGCCAG GGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
genomic: ATGGTCACCCCGATGGACGCCAGgtttgcacct ... ctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGA
attcttgcctaccgactactttttctcttacaattgctcttggggctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAGCAGCTGGTGGTGCTGTTCTATTGGGTTTGGTTGGGCTCGGTATTCTTC
ggctcac putative branch site (score: 3)
tacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcggatcagagtaacgttactagttgatgcatttggagatcacattcttgcctaccgactactttttctcttacaattgctcttggggctcactgcagGGAATGCAAATGGGTATTGCCTTGCCTTCTTTCCTTCTCAATATTCAAGGAGCAGCTGGTGGTGCTGTTCTATTGGGTTTGGTTGGGCTCGGTATTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - cacattc