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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgcaaatgattttgtttcatcacggattgtgattaagtcttgacactacagtcggcattgtttggatatttgacactgacttggagactattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAGCTAAAAATTTCCAGGTTGAGGGTTTCCAAGGCACAGTGTCGTTCATCA

Basic information

species Physcomitrella patens
transcript PP1S23_46V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193399|gb|FC368911.1|FC368911
EST:     TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162161664|gb|FC339079.1|FC339079
EST:     TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162263880|gb|FC438668.1|FC438668
EST:     TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162205182|gb|FC381280.1|FC381280
EST:     GAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: GAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162196916|gb|FC373308.1|FC373308
EST:     TACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162193398|gb|FC368910.1|FC368910
EST:     TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
EST: gi|162205183|gb|FC381281.1|FC381281
EST:     TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATT                         AAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA
genomic: TCTGGAATTCGAAAAAGCTGGTTTCGTACATGGAGATGATGGATATGATTgtaagcattt ... tattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactacagtcggcattgtttggatatttgacactgacttggagactattttgcagAAGAAAAAATTTCCAAGTATACACAGACTGGAAGACCATCCTACCGACACAGCTAAAAATTTCCAGGTTGAGGGTTTCCAAGGCACAGTGTCGTTCATCA
                              cactgac  putative branch site (score: 2)
                                            ctatttt  putative PPT
                      atatttga  TA-rich tract