1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtctccttgtaccataatcactctcttcaagtccacgaaagtcgtgtccctgtcttgtaatactctccacgtccttcagtaaccgttcccattctgttggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACGAAGAAGGCATCGACCTCCCAGGCTGGGTGCAATCCGTGGTTCGAGAAG
species | Physcomitrella patens |
transcript | PP1S235_117V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTG CTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACEST: gi|37833621|gb|BJ591633.1|BJ591633
genomic: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTGgtatgtctcc ... ggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAAC
EST: GTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTG CTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACEST: gi|37834473|gb|BJ592485.1|BJ592485
genomic: GTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTGgtatgtctcc ... ggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAAC
EST: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTG CTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACEST: gi|18340545|gb|BJ172573.1|BJ172573
genomic: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTGgtatgtctcc ... ggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAAC
EST: GACTCAGCAGTCCGATGTGTACAGCTTCGGAGTG CTACTGCTGGAGCTTTTAACCCGGGAAAGCACCGGCTCAAGTTTCGATGAAEST: gi|37822516|gb|BJ580582.1|BJ580582
genomic: GACTCAGCAGTCCGATGTGTACAGCTTCGGAGTGgtatgtctcc ... ggttttgtagCTACTGCTGGAGCTTTTAA-CCGGGAAAGCACCGGCTCAAGTTTCGATGAA
EST: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTG CTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAAC
genomic: CCGAGACTCGTAAAGTGACTCAGCAGTCCGATGTGTACAGCTTCGGAGTGgtatgtctcc ... ggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAAC
cttgtaatactctccacgtccttcagtaaccgttcccattctgttggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACGAAGAAGGCATCGACCTCCCAGGCTGGGTGCAATCCGTGGTTCGAGAAG
cagtaac putative branch site (score: 3)
ttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctccttgtaccataatcactctcttcaagtccacgaaagtcgtgtccctgtcttgtaatactctccacgtccttcagtaaccgttcccattctgttggttttgtagCTACTGCTGGAGCTTTTAACCGGGAAAGCACCGGCTCAAGTTTCGATGAACGAAGAAGGCATCGACCTCCCAGGCTGGGTGCAATCCGTGGTTCGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG