1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcctttcttggtattcttaatcttattgaaaatctgttaagctgtcgtttaggtctcttattatttctgatttgatcattttctaccaaaaccaataatatttttgtacatgctatcttcaggattttttcatgagtaacaattgtaaaatgtgtgaggaggaatcgagatgtagctctttaaccttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTACATTGAGGATGATTATTTGATCTTCGATTGTCCCG
species | Physcomitrella patens |
transcript | PP1S234_26V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGA ATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTAEST: gi|67572391|gb|BJ945215.1|BJ945215
genomic: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGAgtatcctttc ... cttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
EST: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGA ATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTAEST: gi|18368645|gb|BJ200730.1|BJ200730
genomic: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGAgtatcctttc ... cttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
EST: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGA ATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTAEST: gi|100399107|gb|BY954203.1|BY954203
genomic: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGAgtatcctttc ... cttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
EST: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGA ATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTAEST: gi|18350386|gb|BJ182437.1|BJ182437
genomic: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGAgtatcctttc ... cttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
EST: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGA ATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
genomic: ATGGAGGAACTTAAACTTGGGCCAAATGGTGGTCTTGTGTACTGCATGGAgtatcctttc ... cttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTA
caattgtaaaatgtgtgaggaggaatcgagatgtagctctttaaccttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTACATTGAGGATGATTATTTGATCTTCGATTGTCCCG
ctctttaac putative branch site
taaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcctttcttggtattcttaatcttattgaaaatctgttaagctgtcgtttaggtctcttattatttctgatttgatcattttctaccaaaaccaataatatttttgtacatgctatcttcaggattttttcatgagtaacaattgtaaaatgtgtgaggaggaatcgagatgtagctctttaaccttgtggcagATATCTAGAAGATAATCTCGACGACTGGCTGTCAGAGCAGTTGGAAGATTACATTGAGGATGATTATTTGATCTTCGATTGTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG