1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgcttgagagtttgtttgtaattggtaaaagtaccaacaagagttccatttagtggtttgaggtgtttctgctttgacggggttggtggaatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTTTCGGG
species | Physcomitrella patens |
transcript | PP1S232_73V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTEST: gi|208367447|gb|DC954935.1|DC954935
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTEST: gi|208392090|gb|DC941938.1|DC941938
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTEST: gi|162278032|gb|FC453851.1|FC453851
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
EST: GTTAATAGCGGACCAAATACAAATGGATGTCAG TTTTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTEST: gi|37823252|gb|BJ581318.1|BJ581318
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTEST: gi|208388913|gb|DC932941.1|DC932941
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTNCATCACATGTGCCAAGTGCGACTGGCTGGEST: gi|162278033|gb|FC453852.1|FC453852
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGG
EST: GCTAATAGCGGACCAAATACAAATGGATGTCAG TTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
genomic: GCTAATAGCGGACCAAATACAAATGGATGTCAGgtattcaact ... aatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTT
tccatttagtggtttgaggtgtttctgctttgacggggttggtggaatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTTTCGGG
ctttgac putative branch site (score: 5)
aatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttgagagtttgtttgtaattggtaaaagtaccaacaagagttccatttagtggtttgaggtgtttctgctttgacggggttggtggaatatgccagTTCTTCATCACATGTGCCAAGTGCGACTGGCTGGACAACAAACACGTTGTTTTCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA