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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacttacatttccatcacaagaactcgtggtggttctcgtaagagtgacaactgcatgttgcggtattagaagaatgaaaagtgcaggtgctgaaactttagagtgataagatgtttaatggcaatcgtggtctgtgcagGTCTGTAGGATTGGCGACGTGTGCTGGTTGCCATCGCACCCTTGGATTCGGTAGGTTTTTGACGTGCCTCAACCAGAATTGGCACCCAGCTTGCTTTTGC

Basic information

species Physcomitrella patens
transcript PP1S231_3V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208384562|gb|DC915034.1|DC915034
EST:     GCTCCTGGTGTTGCGCCTGCCCCGAATCCAATGGCGGCTCGGGCAACTGG                         GTCTGTAGGATTGGCGACGTGTGCTGGTTGCCATCGCACCCTTGGATTCGG
genomic: GCTCCTGGTGTTGCGCCTGCCCCGAATCCAATGGCGGCTCGGGCAACTGGgtatgaactt ... gtctgtgcagGTCTGTAGGATTGGCGACGTGTGCTGGTTGCCATCGCACCCTTGGATTCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtgctgaaactttagagtgataagatgtttaatggcaatcgtggtctgtgcagGTCTGTAGGATTGGCGACGTGTGCTGGTTGCCATCGCACCCTTGGATTCGGTAGGTTTTTGACGTGCCTCAACCAGAATTGGCACCCAGCTTGCTTTTGC
                            gtttaat  putative branch site (score: 4)
                     ataagatgtttaat  TA-rich tract