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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG

Basic information

species Physcomitrella patens
transcript PP1S22_326V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33921.1 (Oryza sativa), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGA-----ATGTTCTCCTTTTAGAATGCGGAAAG
     || |  || | |  ||    |||   || | || | ||   || ||   || | ||  |  | | | | |||||     |  | | ||||   | |||       ||||||| | |||||||| |||||||| || ||||||||||||||||||||||||   || ||||| ||     |  | ||     | ||| |   | ||   |||      
----gtattatttcatt--gtcaagact-caagctgaaaattgtcatgaat-caatcagtatcttttta-gatgtgttgggtgct-atcttacattattattc-------tttacagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAACTAC-CTACTGGATACTGAAGTTGTGGGTCTATTGTGCTT----

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33979.1 (Oryza sativa), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgt-tgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
     || |  || | | |     | | | ||| | || | |    || ||  ||||| |       ||||| |||  || ||| | |  |||      |||||       | | ||| | |||||||| |||||||| || ||||||||||||||||||||||||   || |||||                                         
----gtattatttcattgtcaagactcca-gagctgaaaattatcatgaat--cattattttgctg-gatgtgttggatgctcacttgcataat-----tgttc-------tctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAA----------------------------------------

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgt-tgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-
     || |  || | | |     | | | ||| | || | |    || ||  ||||| |       ||||| |||  || ||| | |  |||      |||||       | | ||| | |||||||| |||||||| || ||||||||||||||||||||||||   || ||||| |  |  ||| ||     |      | |||     ||     
----gtattatttcattgtcaagactcca-gagctgaaaattatcatgaat--cattattttgctg-gatgtgttggatgctcacttgcataat-----tgttc-------tctgcagAGGTGCAAGCATTTCGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTTTTCTAAATTGC-TTGCTACCTACTGGATACTATAGTTGTTGGTCTAC

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaatttta---cagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTA-GACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
               || | |     || | || |   |  |  | | |   || | |  |  | ||    ||  ||| || |   |  |   |   || ||  |  ||| | |   ||| | ||||||||||| || ||||| |||||||||||||||||||||||   ||||||||| ||   || | ||    ||||| ||  ||    |||    ||
-------------gtctttatcaatgctttcagctt--ctttttttttttcctcctcatcatgttatagcattcggttttttagaagcatctgacccgtcttgttgcaatctgacttcagAGGTGCAAGCACTTTGAAATCGGTGGAGACAAGAAGGGCAAGGGAACTTCACTCTTCTAAGATGCTGATATTGCCCTGTTCCCCAATTCTC-TGCCAGGAG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G009412_T02 (Zea mays), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG--
       || |  |      |   | || ||         ||| ||   |    |||    ||   |||| ||   |   || ||| ||            ||   |  | | |||| | |||||||| || ||||| || ||||||||||||||||||||||||   ||||||||     |  |  | |    |     | || ||  |         
-------gtgcagtgtctcattttc-ctgtgttaggcttgctgttgcacaaagtattgtctcactttgat-ttagctcactctttcctg------actgactcacctg-tgtcacagAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGAACATCTCTCTTCTAAGT--TTCTCATCGCCCATCTCGATGTTGGATCGAACCTGTGG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATG-CGGAAAG
                                 ||    || |   ||  |  ||||| |   |      ||||   | ||  |   || | |     |  || ||||| ||  ||| | ||||||||||| |||||||| || |||||||| |||||||||||    || |||||  | || |  | |   || ||    | |  | |  | |  ||
---------------------------------gtctttacggccatgctt--cattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaactt--cagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAAGC-GTATCATAAACTTGCTCAGGGTCTCAAGTATCTGTCAG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G125527_T02 (Zea mays), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-
                     |  |  | |    |   |  || |     ||    | | ||| |    |  |   ||| | ||  |   |   | ||    |      | | |||| |||||||||| || ||||| || |||||||||||||||||||| |||   || |||||  |  | | ||     |||     | ||    ||  |     
---------------------gtactgtcttgattctcccgtgctaaacttgctgctga-acaaagcatttctccattggttata-gctcactctttgctgactccctgtgtcacagAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGCAAGGGCACATCTCTTTTCTAAGCT-TCTCGTCCACCTGTCTGGTTGTTGAGTTGAAGCTGTG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G160351_T03 (Zea mays), 3'ss of exon 2
gtaattagtcctttactctgtgcgcactat-gaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
              |||||   | | | ||  ||||    || |   ||  |  ||||| |   |      ||||   | ||  |   || | |     |  || ||||| ||  ||| | ||||||||||| |||||||| || |||||||| |||||||||||    || |||||                                         
--------------actctcaacacccgatcaaggtctttacggccatgctt--cattattttgtgccctcgtttgtgttttgttctttgaagctaactttgtcctttaactt--cagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAAGGCAAGGGAACCTCTCTGTTCTAA----------------------------------------

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA15G05670.2 (Glycine max), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-
                           |||  || || || |||    |   |  ||  | |    || ||| | | |  |  ||  |    | ||| | |        || | ||| | ||||||||||| ||||| || || |||||||||||||||||||||  ||||||||||   | |   |||| || |    ||||  |  |  | || | 
--------------------------gtatatggaaagcaatgg---atgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctat-------gttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGA-ATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-
                           ||  |  |  | |    ||  |   |  ||  | |    || ||| | | |  |  ||  |    | ||| | |        || | ||| | ||||||||||| ||||| || || |||||||||||||||||||||  ||||||||||   | |   |||| || |    ||||  |  |  | || | 
-------------------------gttagtatatggaaagcaatggatgcttttttggttccatgtggtgtgtggctaatggttgttagttcctgtctat-------gttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCACTCTTCTAGTTTGAGA-ATTAGGATTTAGAGCTTTATGTTTCAGCAATGT

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G19320.1 (Glycine max), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacata-atgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
                  |  |   |   | |   ||||| |||| |  | ||  ||  |    |  || ||| | | |  |  || ||          |||   | |  || | ||| | ||||||||||| ||||| || || |||||||||||||||||||||   || ||||||   | |   |  || |     | |||||   | | | || 
-----------------gttagtatatggtaaacaaaacaatggtttaaa-gtggttgtttggcatgtgctgtgtggctaatggtttgttcc-------tgtctatgttgttgtgcagAGGTGCAAGCACTTTGAGATTGGTGGTGACAAGAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAAT

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacata-atgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG---------------------------------
                  |  |   |   | |   ||||| |||| |  | ||  ||  |    |  || ||| | | |  |  || ||          |||   | |  || | ||| | ||||||||||| ||||| || || |||||||||||||||||||||   || ||||||   | |   |  || |     | |||||   | | | ||                                  
-----------------gttagtatatggtaaacaaaacaatggtttaaa-gtggttgtttggcatgtgctgtgtggctaatggtttgttcc-------tgtctatgttgttgtgcagaggtgcaagcactttgagattggtggtgacaagAAGGGCAAGGGAACATCTCTGTTCTAGTTTGCGAATTAGGATTCGCAGCTTTTTATGTTTCAGCAATGTTGGAATCTTTTAGTTTCTCTCTGGATTTTTC

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG-
        | ||||   ||   |  ||  | |  |   ||||| |     |  ||   || |  | ||  ||||||     | |   ||   | ||     | |||   |||| ||| | ||||||||||| |||||||| || ||||||||||| || ||||||   ||||||||||  |  |  ||||||| | |   ||     |  |       
--------tacttttgcct---caaacagtaattttgccactgat-----tcccaaacatgctcattgccgttttga-acacgtggttgatgcttgctatgtggttctgttttgcagAGGTGCAAGCACTTTGAGATCGGTGGTGACAAGAAGGGAAAAGGAACATCTCTCTTCTAGATGGAAT-ATTAGAATTTGCAATTTCACACACTCTCTGTAC

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
                             | | ||   |     | | ||  |   | |  ||   |   || |   |  |  ||| |  |   |||||||        |||| ||| | ||||||||||| |||||||| |||||||||||||| |||||||||   ||||| ||    ||  | | |      |    ||||    |  |    |
----------------------------gtaatgtctgcgacattctttacctttgttaatcactctttagtctcagttctgtttcttacactttgtgtgtg-----gtttttgcagAGGTGCAAGCACTTTGAGATCGGTGGAGACAAGAAGGGAAAGGGAACATCTCTCTTTTAAGTTGTTGTTTCATCTATCTACTTTTTTTTGTTTTGTTTGG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattagtcctttactctgtgcgcactatgaggtaaacactggtgtgtatgtcattaatacataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
                             ||     ||||  | |  ||   ||||||   |  | |  |   ||| |  |  | | |  |   |||  ||| |||   | || ||| | |||||||| ||||||||||| || ||||||||||| |||||||||   || || ||    |  ||  |   || |||| |  ||    | |     |
----------------------------gtgcatagaacatagatcagt---tcattataccggatttgtaacttggtaatt-tgcttacattgtgttggtttgttgtttatttcagAGGTGCAAGCATTTCGAGATCGGTGGTGACAAGAAGGGAAAGGGAACATCTCTGTTTTAAGTTGGTTTCATCTTATTTTCTGCGATTTTTGTACTTGCTG

upper sequence: PP1S22_326V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 3'ss of exon 4
-----------------------------------------------------------------gtaattagtcctttactctgtgcgcactatgaggta-----aacactggtgtgtatgtcat--taatacat-----aatgatgttt--tgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAG---GGCAAGGGAACACAACT-CTTCTAGACAGTGTTGTTAGAATGT-TCTCCTTTTAGAATGCGGAAAG
                                                                 ||||   |  |    |  ||||       || || |     |  ||  |   | |  |  |     | |||     | ||   | |   |  ||||  ||   |   | |   |  ||||       |||||| |||||||||||||||||||| || |||||||||   |||||   |||    |  | |   | | ||    |  ||| || |  |   |  |  || || || 
gtgggtggggcgccagatgtggggcactgatacgcttgcgggctgtgttgtggcacggatcaacagtaaaccggacgaagcattgtggctggggtggggaagcgacagtacaagccagcaacttgtgcccgtgcatgcgccagtggcctctgacgccgttcgctccgctccaacgctcgcccgttcttccccacagCGCTGCAAGCACTTCGAGATCGGTGGTGACAAGAAGAAGGGCAACTAAACGTGGCGGCCTACCGGCGGT----TAGGAACGTGTAACGAGTCCGCGTGAGGCAA-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18368682|gb|BJ200767.1|BJ200767
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|162262338|gb|FC437665.1|FC437665
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|162228552|gb|FC404150.1|FC404150
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|18335674|gb|BJ167694.1|BJ167694
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|18360736|gb|BJ192799.1|BJ192799
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|162225415|gb|FC401193.1|FC401193
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|162221524|gb|FC397541.1|FC397541
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|67575316|gb|BJ948140.1|BJ948140
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|67698779|gb|BJ959012.1|BJ959012
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
EST: gi|18327408|gb|BJ159410.1|BJ159410
EST:     TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAG                         CGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA
genomic: TGAGGTTACAGTGCCAGGCTTGCAAGCACGTGACACAACATCCTATCAAGgtaattagtc ... aattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatgatgttttgttgttcattcgtgtaacatgtgtgttcgtttaattttacagCGATGCAAGCACTTCGAGATCGGAGGAGACAAGAAGGGCAAGGGAACACAACTCTTCTAGACAGTGTTGTTAGAATGTTCTCCTTTTAGAATGCGGAAAG
                                      ttcgtttaatttta  TA-rich tract