1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aattatcgatccgcatctaatttactactaagttcagcgtctagctatgtttgtactcagtgttgagatgtcagcactaatcagttgtctaatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGAATGAGGAAATTTTACGCCTCGAACGAGAGGAGAGTGACGATAATAGTC
species | Physcomitrella patens |
transcript | PP1S222_130V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|67570167|gb|BJ942991.1|BJ942991
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|162181666|gb|FC358696.1|FC358696
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|100443300|gb|BY963596.1|BY963596
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18362678|gb|BJ194749.1|BJ194749
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|67574627|gb|BJ947451.1|BJ947451
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18372863|gb|BJ204465.1|BJ204465
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGEST: gi|162170244|gb|FC347364.1|FC347364
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18374599|gb|BJ206177.1|BJ206177
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|162220370|gb|FC395738.1|FC395738
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18363986|gb|BJ196059.1|BJ196059
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAEST: gi|162196667|gb|FC374632.1|FC374632
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAA
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18347979|gb|BJ180026.1|BJ180026
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18365214|gb|BJ197288.1|BJ197288
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|162257683|gb|FC433610.1|FC433610
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18373428|gb|BJ205006.1|BJ205006
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGEST: gi|162168431|gb|FC344407.1|FC344407
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18359898|gb|BJ191959.1|BJ191959
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGEST: gi|18374996|gb|BJ206574.1|BJ206574
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18360287|gb|BJ192349.1|BJ192349
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|100434971|gb|BY960896.1|BY960896
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|162149665|gb|FC326716.1|FC326716
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|18355255|gb|BJ187314.1|BJ187314
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGEST: gi|162162513|gb|FC338607.1|FC338607
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
EST: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAG ATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
genomic: CAGATCCTACAACAAATCCTGAAGATGTGAGAAAGCAGTTTCTTAACAAGgtacgcgaca ... aatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTG
tatgtttgtactcagtgttgagatgtcagcactaatcagttgtctaatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGAATGAGGAAATTTTACGCCTCGAACGAGAGGAGAGTGACGATAATAGTC
tctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatcgatccgcatctaatttactactaagttcagcgtctagctatgtttgtactcagtgttgagatgtcagcactaatcagttgtctaatttggtagATTACATACATACACGGGGCGTATGATGCTGATGAAGGTTTTATCAAGTTGAATGAGGAAATTTTACGCCTCGAACGAGAGGAGAGTGACGATAATAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA