Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgatgcggtcgtcagtagaaatgtatcattgttttcatcagccattggtgctatttcagtacttgtatcctggttaacaattacgtcttgtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGATCAGTCTTGCCAATCGTTAAGCCCCGACCTACCGTAGAGATCGTATCTG

Basic information

species Physcomitrella patens
transcript PP1S21_106V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162206570|gb|FC382939.1|FC382939
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18357023|gb|BJ189082.1|BJ189082
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208397822|gb|DC916157.1|DC916157
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18345554|gb|BJ177597.1|BJ177597
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAA
EST: gi|67718316|gb|BJ968575.1|BJ968575
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCNAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67726726|gb|BJ976985.1|BJ976985
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67719256|gb|BJ969515.1|BJ969515
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208399919|gb|DC904973.1|DC904973
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18367825|gb|BJ199908.1|BJ199908
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCC
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCC
EST: gi|67579107|gb|BJ951258.1|BJ951258
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|19790040|gb|BQ041663.1|BQ041663
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67710010|gb|BJ965817.1|BJ965817
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162244824|gb|FC420176.1|FC420176
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18345907|gb|BJ177950.1|BJ177950
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGC
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGC
EST: gi|18345979|gb|BJ178022.1|BJ178022
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGG
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGG
EST: gi|18334280|gb|BJ166297.1|BJ166297
EST:     GGTTGTCTTCCCCAGACGC-CTCGCAAGTCGAAG                         GCTGNAGATGCAACCGCCNAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: GGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162222991|gb|FC399934.1|FC399934
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67720404|gb|BJ970663.1|BJ970663
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208356323|gb|DC957357.1|DC957357
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18343560|gb|BJ175598.1|BJ175598
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGC
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGC
EST: gi|67716621|gb|BJ966881.1|BJ966881
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162244825|gb|FC420177.1|FC420177
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162210890|gb|FC386988.1|FC386988
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67724080|gb|BJ974339.1|BJ974339
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67700840|gb|BJ961073.1|BJ961073
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67726808|gb|BJ977067.1|BJ977067
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162238406|gb|FC414570.1|FC414570
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18352135|gb|BJ184189.1|BJ184189
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37836391|gb|BJ594399.1|BJ594399
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162212095|gb|FC388205.1|FC388205
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37825093|gb|BJ583159.1|BJ583159
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162207356|gb|FC383913.1|FC383913
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67712796|gb|BJ966245.1|BJ966245
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162210889|gb|FC386987.1|FC386987
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67718238|gb|BJ968497.1|BJ968497
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67577971|gb|BJ950138.1|BJ950138
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67720392|gb|BJ970651.1|BJ970651
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18374249|gb|BJ205827.1|BJ205827
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTT
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTT
EST: gi|37830911|gb|BJ588923.1|BJ588923
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162230652|gb|FC406075.1|FC406075
EST:     CCTACAGGGCCAAGTTGGTTGTTTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTATTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67709760|gb|BJ965576.1|BJ965576
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|15326972|gb|BI487421.1|BI487421
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37846760|gb|BJ604768.1|BJ604768
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18357231|gb|BJ189290.1|BJ189290
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162212094|gb|FC388204.1|FC388204
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162207357|gb|FC383914.1|FC383914
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67725141|gb|BJ975400.1|BJ975400
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208386414|gb|DC937081.1|DC937081
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|19780298|gb|BQ039543.1|BQ039543
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208357736|gb|DC902288.1|DC902288
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162222992|gb|FC399935.1|FC399935
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162238405|gb|FC414569.1|FC414569
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162242012|gb|FC415784.1|FC415784
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37822760|gb|BJ580826.1|BJ580826
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18351568|gb|BJ183620.1|BJ183620
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37837442|gb|BJ595450.1|BJ595450
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67722269|gb|BJ972528.1|BJ972528
EST:     CCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67727557|gb|BJ977816.1|BJ977816
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37836600|gb|BJ594608.1|BJ594608
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|208378243|gb|DC918864.1|DC918864
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37844810|gb|BJ602818.1|BJ602818
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162265262|gb|FC440185.1|FC440185
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162209980|gb|FC385810.1|FC385810
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162230653|gb|FC406076.1|FC406076
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162212150|gb|FC388260.1|FC388260
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37831823|gb|BJ589835.1|BJ589835
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162271728|gb|FC448653.1|FC448653
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162271729|gb|FC448654.1|FC448654
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|18366384|gb|BJ198463.1|BJ198463
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTT
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTT
EST: gi|67724507|gb|BJ974766.1|BJ974766
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162265263|gb|FC440186.1|FC440186
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37848367|gb|BJ606375.1|BJ606375
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67507833|gb|BJ940710.1|BJ940710
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|67694654|gb|BJ954887.1|BJ954887
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|162212149|gb|FC388259.1|FC388259
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
EST: gi|37824670|gb|BJ582736.1|BJ582736
EST:     CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAG                         GCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA
genomic: CCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 23

CAAAAATCGATGCCTGGAAAGTCTTCAGGAGAATGTCAACCGACTTAACACCTACAGGGCCAAGTTGGTTGTCTTCCCCAGACGCGCTCGCAAGTCGAAGgtacgagatt ... gtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGATCAGTCTTGCCAATCGTTAAGCCCCGACCTACCGTAGAGATCGTATCTG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgctatttcagtacttgtatcctggttaacaattacgtcttgtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGATCAGTCTTGCCAATCGTTAAGCCCCGACCTACCGTAGAGATCGTATCTG
                           ggttaac  putative branch site (score: 23)
                                         tcttgttt  putative PPT
                             ttaacaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgatgcggtcgtcagtagaaatgtatcattgttttcatcagccattggtgctatttcagtacttgtatcctggttaacaattacgtcttgtttattcagGCTGGAGATGCAACCGCCGAGGAGTTGTCGAGTGCAACCCAGGTTACTAGATCAGTCTTGCCAATCGTTAAGCCCCGACCTACCGTAGAGATCGTATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC