Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttgaactgtagccgccgctgatagattatgagatctagctagtacacttgtccctttcgcatccatactcatttttaacgaaccatcaactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGACTTGAAGGAATTGGTTGCCAAATTCATTCCTGAGGTCATCGGGAAGGAGA

Basic information

species Physcomitrella patens
transcript PP1S219_50V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162238339|gb|FC415881.1|FC415881
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162219262|gb|FC395258.1|FC395258
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162266508|gb|FC442544.1|FC442544
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37848007|gb|BJ606015.1|BJ606015
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162269619|gb|FC444850.1|FC444850
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162268891|gb|FC445713.1|FC445713
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162263546|gb|FC439575.1|FC439575
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162238312|gb|FC415880.1|FC415880
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37844486|gb|BJ602494.1|BJ602494
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37850583|gb|BJ608591.1|BJ608591
EST:     CGATCCAGATCAAGGAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162280002|gb|FC456188.1|FC456188
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162248983|gb|FC420338.1|FC420338
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|67571923|gb|BJ944747.1|BJ944747
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37833165|gb|BJ591177.1|BJ591177
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162217288|gb|FC392028.1|FC392028
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|208362470|gb|DC943725.1|DC943725
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162263545|gb|FC439574.1|FC439574
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162260761|gb|FC435413.1|FC435413
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162270425|gb|FC447541.1|FC447541
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162217289|gb|FC392029.1|FC392029
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37841165|gb|BJ599173.1|BJ599173
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37851791|gb|BJ609799.1|BJ609799
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162266098|gb|FC441847.1|FC441847
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|100445211|gb|BY982840.1|BY982840
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162280003|gb|FC456189.1|FC456189
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162248982|gb|FC420337.1|FC420337
EST:     CGAACCAGATCAAGAAAACTTGTTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162266507|gb|FC442543.1|FC442543
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|67699231|gb|BJ959464.1|BJ959464
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37845626|gb|BJ603634.1|BJ603634
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162258377|gb|FC434928.1|FC434928
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|208390671|gb|DC937827.1|DC937827
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162259533|gb|FC435460.1|FC435460
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|18339907|gb|BJ171934.1|BJ171934
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162268892|gb|FC445714.1|FC445714
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|208386756|gb|DC929202.1|DC929202
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37826666|gb|BJ584678.1|BJ584678
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162258378|gb|FC434929.1|FC434929
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162252182|gb|FC425860.1|FC425860
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|67695290|gb|BJ955523.1|BJ955523
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162266097|gb|FC441846.1|FC441846
EST:     CGAACCAGATCAAGAAAACTTGTTACGTTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162263260|gb|FC439068.1|FC439068
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162276244|gb|FC452598.1|FC452598
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162252181|gb|FC425859.1|FC425859
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162260760|gb|FC435412.1|FC435412
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|18340646|gb|BJ172675.1|BJ172675
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|15261389|gb|BI436699.1|BI436699
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162276243|gb|FC452597.1|FC452597
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162259534|gb|FC435461.1|FC435461
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|18356228|gb|BJ188287.1|BJ188287
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37842939|gb|BJ600947.1|BJ600947
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGT-AAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|18347464|gb|BJ179510.1|BJ179510
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTC
EST: gi|162269620|gb|FC444851.1|FC444851
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|67698651|gb|BJ958884.1|BJ958884
EST:     TACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: TACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162265018|gb|FC441521.1|FC441521
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|208365423|gb|DC950890.1|DC950890
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162270426|gb|FC447542.1|FC447542
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37851720|gb|BJ609728.1|BJ609728
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         AATTCAG-CGCAAGATGCGAGAAATTATGGTGCGNGAAGCTCAGTCTTGTG
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagA-T-CAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTG
EST: gi|37844498|gb|BJ602506.1|BJ602506
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|162265017|gb|FC441520.1|FC441520
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37843987|gb|BJ601995.1|BJ601995
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
EST: gi|37832956|gb|BJ590968.1|BJ590968
EST:     CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAA                         ATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC
genomic: CGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 31 (upstream exon), 35 (downstream exon)
Score: 108

TGACAACTACATGATCCGCATGTTCTGTATTGCCTTCACTAAGAAGAGGCCGAACCAGATCAAGAAAACTTGCTACGCTCAGACGAGCCAGATCCGTCAAgtacgtcttg ... aactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGACTTGAAGGAATTGGTTGCCAAATTCATTCCTGAGGTCATCGGGAAGGAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacacttgtccctttcgcatccatactcatttttaacgaaccatcaactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGACTTGAAGGAATTGGTTGCCAAATTCATTCCTGAGGTCATCGGGAAGGAGA
                              ttttaac  putative branch site (score: 108)
                      atactcatttttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttgaactgtagccgccgctgatagattatgagatctagctagtacacttgtccctttcgcatccatactcatttttaacgaaccatcaactttacagATCAGGCGCAAGATGCGAGAAATTATGGTGCGTGAAGCTCAGTCTTGTGACTTGAAGGAATTGGTTGCCAAATTCATTCCTGAGGTCATCGGGAAGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA