1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgtaagtggagctttcagcgtgaaattatgtattatacgtatcgctgcccgcaccaccttaatttcttaaagccacttgttattctgtttgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGTTTGAAAGCTTAGGTGTCCGACCTCCCAAAGGAGTGTTGTTATATGGCC
species | Physcomitrella patens |
transcript | PP1S218_133V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162173415|gb|FC349794.1|FC349794
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162176626|gb|FC352471.1|FC352471
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100393599|gb|BY953447.1|BY953447
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: TGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGNATAA-CAG ATTCAAGAGTTGATGGAAGCAATTTGT-CTTCCTATGACTCANCAA-GA-EST: gi|208384557|gb|DC915029.1|DC915029
genomic: TGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGG-ATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATT-GTTCTTCCTATGACTCA-CAAAGAA
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAEST: gi|208379283|gb|DC927280.1|DC927280
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAA
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|208393155|gb|DC907978.1|DC907978
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAACCAG ATTCAAGAGTTGATGGEST: gi|208367277|gb|DC939835.1|DC939835
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCANGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100362918|gb|BY947594.1|BY947594
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162279775|gb|FC455683.1|FC455683
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|208373514|gb|DC931917.1|DC931917
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCNAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100423272|gb|BY958215.1|BY958215
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: TGAGAAACCTACAGAGGTGTACTCGGATATGGGTGGTCTGGATAAAACAG AT-CAAGAGTTGATGGAAGCAATTTTGTCT-CCTATGACTCEST: gi|162260448|gb|FC435061.1|FC435061
genomic: TGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAA-CAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGT-TCTTCCTATGACTC
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|208351808|gb|DC910362.1|DC910362
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGNTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100386534|gb|BY951330.1|BY951330
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|208357259|gb|DC910656.1|DC910656
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAA-GANCGGEST: gi|208378607|gb|DC903638.1|DC903638
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162155457|gb|FC330953.1|FC330953
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100445979|gb|CJ970278.1|CJ970278
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162167872|gb|FC344810.1|FC344810
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162162468|gb|FC339199.1|FC339199
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|100399109|gb|BY954204.1|BY954204
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGEST: gi|162168240|gb|FC344970.1|FC344970
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
EST: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAG ATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
genomic: ATGAGAAACCTACAGAGGTGTACTCGGATATTGGTGGTCTGGATAAACAGgtgtgattgt ... tgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGG
ctgcccgcaccaccttaatttcttaaagccacttgttattctgtttgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGTTTGAAAGCTTAGGTGTCCGACCTCCCAAAGGAGTGTTGTTATATGGCC
ccttaat putative branch site (score: 19)
ttctgttt putative PPT
ttaatttcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtaagtggagctttcagcgtgaaattatgtattatacgtatcgctgcccgcaccaccttaatttcttaaagccacttgttattctgtttgtatgacagATTCAAGAGTTGATGGAAGCAATTGTTCTTCCTATGACTCACAAAGAACGGTTTGAAAGCTTAGGTGTCCGACCTCCCAAAGGAGTGTTGTTATATGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG