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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctttacattttttttaaatttcaggttctgtggtccaagataccaattcgactgaaagttatatttcgaataattcatgtattatgtttcgtagtaaatgtcatgcattggggtctattacataaggatttctttttaatgaggcctacatttgacgagattgttgaaactgattcgtagcttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCGACAACGAACGTCACTTCATCAGTCACGTGTTGGCTTTCTTCGCAGCGTC

Basic information

species Physcomitrella patens
transcript PP1S215_91V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358338|gb|DC943197.1|DC943197
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
EST: gi|100427993|gb|BY959229.1|BY959229
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
EST: gi|100395351|gb|BY953694.1|BY953694
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
EST: gi|162209778|gb|FC385712.1|FC385712
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
EST: gi|18372330|gb|BJ203932.1|BJ203932
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATC
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATC
EST: gi|162262142|gb|FC437911.1|FC437911
EST:     CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAG                         CTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG
genomic: CCCACAAGTATGGGAGATGTATAAAAAGGCTGAAGCTTCATTTTGGACAGgtctctttac ... ttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgaggcctacatttgacgagattgttgaaactgattcgtagcttgaatgcagCTGAGGAGGTTGATCTATCAGCAGACTTGAAGCACTGGGAAGCTTTGACCGACAACGAACGTCACTTCATCAGTCACGTGTTGGCTTTCTTCGCAGCGTC
                               aactgat  putative branch site (score: 3)
          tacattt  TA-rich tract