1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tactgttttccggttgtttgtgtgagattccttttccatcgcaagcttactcgtaacaaaactaatggaattaccttcattattgtttcatcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTAATCCCGGAGCTTCTGGACCGCTTTGGTGGAGTCCAATTTTCGGAGCCT
species | Physcomitrella patens |
transcript | PP1S215_109V6.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTEST: gi|162262567|gb|FC439753.1|FC439753
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
EST: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTEST: gi|162276352|gb|FC452433.1|FC452433
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
EST: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAA CTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
genomic: GATATCTTAGGACTGTCTCGTGATCCTACAGCTTTCGAAAGATATTTCAAgtatgttatg ... tcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGT
cttactcgtaacaaaactaatggaattaccttcattattgtttcatcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTAATCCCGGAGCTTCTGGACCGCTTTGGTGGAGTCCAATTTTCGGAGCCT
aactaat putative branch site (score: 2)
tttcatc putative PPT
attattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgttttccggttgtttgtgtgagattccttttccatcgcaagcttactcgtaacaaaactaatggaattaccttcattattgtttcatcgtgatcagCTTTGAGATCTTGCATGCTCGCTGGGCAATGCTTGCTGCTTTGGGTGTAGTAATCCCGGAGCTTCTGGACCGCTTTGGTGGAGTCCAATTTTCGGAGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG