1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...catgttccgaggccctctcttagcgatgttgaaatcctcaacattacttatctgagaagcatccgtgcttttcaaatgtgtgttttctgggatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAATCCCCAACCTGCAATCTATACTGGATGCAGCTGATGGA
species | Physcomitrella patens |
transcript | PP1S205_25V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|100407600|gb|BY991774.1|BY991774
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162179280|gb|FC356229.1|FC356229
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|208359054|gb|DC957802.1|DC957802
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: TTTGTCAAGGATGCTCAGGNGGTGCATGAACTCAAGTTCNTTTNTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162156500|gb|FC332108.1|FC332108
genomic: TTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAG-TCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|208360056|gb|DC939332.1|DC939332
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162278586|gb|FC454048.1|FC454048
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162177062|gb|FC353115.1|FC353115
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162177266|gb|FC353423.1|FC353423
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162179457|gb|FC355457.1|FC355457
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAAEST: gi|162159393|gb|FC334661.1|FC334661
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
EST: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAG GAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
genomic: CTTTGTCAAGGATGCTCAGGTGGTGCATGAACTCAAGTCCTTTCTAAAAGgtatgtttcg ... gatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAA
acttatctgagaagcatccgtgcttttcaaatgtgtgttttctgggatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAATCCCCAACCTGCAATCTATACTGGATGCAGCTGATGGA
ttttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgttccgaggccctctcttagcgatgttgaaatcctcaacattacttatctgagaagcatccgtgcttttcaaatgtgtgttttctgggatggtacagGAAAGTCTGCTGACATTCACGTTATCGTGAAGATTGAAAGCGCTGATTCAATCCCCAACCTGCAATCTATACTGGATGCAGCTGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - tgttgaa