1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcgtaatcgctgattgaatttggcagagtaactatctcttagaatccagcatatatgtcttttagatttcattaaatgcacaaatttaatgttttctgacgttattacacgtgattccttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCCTTCGCATGATGTAACCATGGACTCTACTCCTGCTAGGTTTTGAGATGA
species | Physcomitrella patens |
transcript | PP1S204_49V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162207612|gb|FC384065.1|FC384065
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTCAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162264253|gb|FC441355.1|FC441355
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162211993|gb|FC388455.1|FC388455
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162231344|gb|FC406767.1|FC406767
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162184761|gb|FC361063.1|FC361063
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTNAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|67722912|gb|BJ973171.1|BJ973171
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACCATAGTTTEST: gi|162184143|gb|FC358889.1|FC358889
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGAC-ATAGTTT
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162211994|gb|FC388456.1|FC388456
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTNAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162264252|gb|FC441354.1|FC441354
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|7147798|gb|AW509720.1|AW509720
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|67728029|gb|BJ978288.1|BJ978288
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|100370341|gb|BY985362.1|BY985362
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162184760|gb|FC361062.1|FC361062
genomic: AGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|162252337|gb|FC427276.1|FC427276
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCEST: gi|67722063|gb|BJ972322.1|BJ972322
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
EST: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAG ACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
genomic: AAATTAAGGAGCGCAAGAACCGTTCCAAGAAGATCAGGGGTGTGAAGAAGgtatgcgtaa ... ttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTC
aaatgcacaaatttaatgttttctgacgttattacacgtgattccttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCCTTCGCATGATGTAACCATGGACTCTACTCCTGCTAGGTTTTGAGATGA
ttctgac putative branch site (score: 202)
ttccttctctgc putative PPT
acaaatttaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcgtaatcgctgattgaatttggcagagtaactatctcttagaatccagcatatatgtcttttagatttcattaaatgcacaaatttaatgttttctgacgttattacacgtgattccttctctgcagACTAAGGCCGCTGGTGACGCTAAGAAGAAAAAGTAGATGTGACATAGTTTCCTTCGCATGATGTAACCATGGACTCTACTCCTGCTAGGTTTTGAGATGA
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