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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggttttaaaatctcgatggcttttactgcttatttctctgtaacattactgtgttgttcatgagaaaagggcttattctgccagtttttggttaaacagAGAGCAAATGATTTGGTTAGGATAAAGATTCATCCGACTTCTATTATCAGTGGTTATCGA

Basic information

species Physcomitrella patens
transcript PP1S200_112V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18351323|gb|BJ183375.1|BJ183375
EST:     TCGGAGATGGTACAACATCTGTTGTTATTATTGCTTCGGAGCTTCTTANN                         ANAGCAAATGATTTGG
genomic: TCGGAGATGGTACAACATCTGTTGTTATTATTGCTTCGGAGCTTCTTAAGgtcactgcct ... ggttaaacagAGAGCAAATGATTTGG
EST: gi|18345169|gb|BJ177210.1|BJ177210
EST:     TCGGAGATGGTACAACATCTGTTGTTATTATTGCTTCGGAGCTTCTTAAG                         AGAGCAAATGATTTGGTTAGGATAAAGATTCATCCGACTTCTATTATCAGT
genomic: TCGGAGATGGTACAACATCTGTTGTTATTATTGCTTCGGAGCTTCTTAAGgtcactgcct ... ggttaaacagAGAGCAAATGATTTGGTTAGGATAAAGATTCATCCGACTTCTATTATCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactgtgttgttcatgagaaaagggcttattctgccagtttttggttaaacagAGAGCAAATGATTTGGTTAGGATAAAGATTCATCCGACTTCTATTATCAGTGGTTATCGA
                            ttattct  TA-rich tract