Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttcgagatttggcctatcaaatttttgggacttcaaaatgctgaaggtttttattcttggtgcaaatacacagggtttacttcaccctacttcgagcaattgtttcatggttttaaaagcgaatgatctgctaatattctgcccgtgaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG

Basic information

species Physcomitrella patens
transcript PP1S1_489V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S1_489V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ36169 (Selaginella moellendorffii), 3'ss of exon 2
gtgagttttcgagatttggcctatcaaatttttgggacttcaaaatgctgaaggtttttattcttggtgcaaatacacagggtttacttcaccctacttcgagcaattgtttcatggttttaaaa--gcgaatgatctgctaatattctgcccgtgaata--cgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG
                                                                                                      | ||    || |   | |  |    | | | | |||   | | |   ||  |||  |   |||||  |||| | ||||| |||| |||  |||||||||||||||||||||| ||||| |||| ||| || | ||| |                           
------------------------------------------------------------------------------------------------------gtaaacaatttagaatctagaggtggtggaagctctaaaactttctcgcttgtgtttcttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S1_489V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ18648 (Selaginella moellendorffii), 3'ss of exon 3
gtgagttttcgagatttggcctatcaaatttttgggacttcaaaatgctgaaggtttttattcttggtgcaaatacacagggtttacttcaccctacttcgagcaattgtttcatggttttaaaagcgaatgatctgctaatattctgcccgtgaata--cgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG
                                                                                                     ||||||| || ||| ||       | |   | ||||  | | |   |   |||  |   |||||  |||| | ||||| |||| |||  |||||||||||||||||||||| ||||| |||| ||| || | ||| |                           
--------------------------------------------------------------------------------------------------gtaagcaatt-ttccattgtagaggtggtggcagctctgaaactttctcgtttgtgttttttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S1_489V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ18646 (Selaginella moellendorffii), 3'ss of exon 3
gtgagttttcgagatttggcctatcaaatttttgggacttcaaaatgctgaaggtttttattcttggtgcaaatacacagggtttacttcaccctacttcgagcaatt--gtttcatggttttaaaagcgaatgatctgctaatattctgcccgtgaata--cgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG
                                                                                                     | |||||  |  ||    ||  | | | | | | | |   | | |   |   |||  |   |||||  |||| | ||||| |||| |||  |||||||||||||||||||||| ||||| |||| ||| || | ||| |                           
--------------------------------------------------------------------------------------------------gtaaacaatttagaatctccattgcagaggtggaagctttaaaactttctcgtttgtgtttcttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGA-------------------------

upper sequence: PP1S1_489V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: EFJ36167 (Selaginella moellendorffii), 3'ss of exon 3
gtgagttttcgagatttggcctatcaaatttttgggacttcaaaatgctgaaggtttttattcttggtgcaaatacacagggtttacttcaccctacttcgagcaattgtttcatggttttaaaagcgaatgatctgctaatattctgcccgtgaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG
                                                                                                      | ||    ||     || || | | |   |      ||| | | |         | |||||  |||| | ||||| |||| |||  |||||||||||||||||||||| ||||| |||| ||| || | ||| |    |     ||  |  || |     |
------------------------------------------------------------------------------------------------------gtaaacaattttccattgtagaggtggtggcagctttaaaactttcttt----cttcgcagCTTTCCCTCAAGACGGAGAAGCAAAAGAAGAAGGAGGCTTACTTCCCGATGAGAAAGTACGCTGTGAGGGCGTGAGGAGAGACGCAAGCAGCGTGAGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162241794|gb|FC418049.1|FC418049
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67722592|gb|BJ972851.1|BJ972851
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37835950|gb|BJ593962.1|BJ593962
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|7147721|gb|AW509586.1|AW509586
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTACATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67699814|gb|BJ960047.1|BJ960047
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|7286496|gb|AW598983.1|AW598983
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|208379526|gb|DC911137.1|DC911137
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37826607|gb|BJ584619.1|BJ584619
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162253359|gb|FC429785.1|FC429785
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37840235|gb|BJ598243.1|BJ598243
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162207763|gb|FC383848.1|FC383848
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18362518|gb|BJ194588.1|BJ194588
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37828619|gb|BJ586631.1|BJ586631
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37841368|gb|BJ599376.1|BJ599376
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18373127|gb|BJ204729.1|BJ204729
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162206828|gb|FC382690.1|FC382690
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|208400306|gb|DC924944.1|DC924944
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37829418|gb|BJ587430.1|BJ587430
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18348983|gb|BJ181032.1|BJ181032
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162249736|gb|FC425615.1|FC425615
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162201613|gb|FC378275.1|FC378275
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67572130|gb|BJ944954.1|BJ944954
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37843649|gb|BJ601657.1|BJ601657
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37828742|gb|BJ586754.1|BJ586754
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162203065|gb|FC380137.1|FC380137
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162209802|gb|FC385736.1|FC385736
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67576303|gb|BJ949127.1|BJ949127
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAG
EST: gi|208346684|gb|DC913330.1|DC913330
EST:     TGCGTCCGAAGAAGACTCGCGCTAATCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18363018|gb|BJ195090.1|BJ195090
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|15262009|gb|BI437319.1|BI437319
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|19790251|gb|BQ041774.1|BQ041774
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162233066|gb|FC408473.1|FC408473
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162219025|gb|FC394920.1|FC394920
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67695496|gb|BJ955729.1|BJ955729
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|37839792|gb|BJ597800.1|BJ597800
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162211961|gb|FC388041.1|FC388041
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|67573978|gb|BJ946802.1|BJ946802
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162240218|gb|FC418345.1|FC418345
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|208379510|gb|DC911121.1|DC911121
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAANACCGAGAGGCANGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162260996|gb|FC437416.1|FC437416
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162232000|gb|FC409074.1|FC409074
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162230936|gb|FC407191.1|FC407191
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|208379596|gb|DC927093.1|DC927093
EST:     TGCGTCCGAAGAAGACTCGCGCTAATCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|22132938|gb|BQ827449.1|BQ827449
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18349777|gb|BJ181827.1|BJ181827
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162253358|gb|FC429784.1|FC429784
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|162212786|gb|FC388586.1|FC388586
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18349657|gb|BJ181707.1|BJ181707
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATG
EST: gi|18364283|gb|BJ196356.1|BJ196356
EST:     TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAG                         GCTTCCATGAAGAC
genomic: TGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 48

GGCAAGTCTTCGAGAAGCCTACAGCAAGAAGAAGTTCCTTCCCATTGACTTGCGTCCGAAGAAGACTCGCGCTATTCGCAGGAGGTTGACCAAGCACCAGgtgagttttc ... gaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcatggttttaaaagcgaatgatctgctaatattctgcccgtgaatacgcagGCTTCCATGAAGACCGAGAGGCAGGAGAAGAAGGAGGCTTACTTCCCCATGAGGAAGTTCGCAGTTAAGGCTTAGAAATCTGTGCTTGGTGCATCGATCG
                           tgctaat  putative branch site (score: 48)
         ttttaaaa  TA-rich tract