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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT

Basic information

species Physcomitrella patens
transcript PP1S197_22V6.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 3'ss of exon 3
-----------gtacag---aatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
           || ||    ||| || |||  | | | |   ||     |  |||   ||  |   || |      |||   | ||  ||     | ||  | | ||||| | || ||||||||||| || ||   ||||||||| || || |||||||||||||| || || || || ||||||||||||||||| || ||||| || |
cacttggaagtgttcaagctaatgcaaatatgcacttctgaatgttcaggatgctcccagtattgctatc------taaattattgctgc----ccatttgtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G074386_T01 (Zea mays), 3'ss of exon 3
-----------------------------------------gtacagaatccagatactcgcgtgttggtgc--attagtcgcttgtagagtaattagcaga--cattaagaaactga-agcattttccttca---tgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
                                          |    | || |    |     ||||| | |  |   ||    |  || |  || | | |   || ||   |    | || || || | |     ||||| ||| | || || ||||||||||||||   ||||||||| || || |||||||| || || || ||||| || ||||||||||| ||||| || |||||||| |
gtaaaaattacaactaaaactcagcttgtaaattgttttatatgttcattctatcaccctttttgttgataccaagcggttatatcaagcgccataaactgcaccagtactgattcaatagtatctttcatttgtctgtatatagCTATACCAACACCAGCATAACAAAAGGATGAGCTGCCCTGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGCTTCTTCCCATATTACGCCT

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM5G817037_T02 (Zea mays), 3'ss of exon 3
----------------------------------------gtacagaatccagatac--tcgcgtgttggtgcattagtcgcttg---tagagtaattag-cagacattaagaa----------actgaagc---attttccttcat------gtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
                                         || |   ||    |||  ||   | ||  |  || |  |  ||    || |  ||  || ||| || ||  ||          |||||  |   ||| || |||||      |||| ||| | || || ||||||||||| ||   ||||||||| || || |||||||| || || || ||||| || ||||||||||||||||| || |||||||| |
gtaaaatttacaacaaactcctatcagcgtctaaattgttttatatgttcattctaccatcctttttttttatatcaagcagttcccttatatcaagcagacaggcactataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA08G39420.2 (Glycine max), 3'ss of exon 1
-gtacagaatccagatactcgcgtgtt-----ggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
 ||  |   | ||| | ||| | ||||       | |  | |       | ||     | || |  |     |   ||     ||||   || || ||| ||||||||||||| || || |||||||| ||||| || || || ||||| ||  |||| ||||| || ||||| ||||| || |||||||| ||||| || |
tgtgtacc-ttcagtttctcccttgttttaagtttacgatggcaaaaaatggaagcccttgctggaacctttatgatgtcatcttttgactc-tgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA18G19340.1 (Glycine max), 3'ss of exon 3
-gtacagaa--tccagatactcgcgtgtt---ggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
 |||    |  | ||| | ||| | ||||    ||  |  |       || ||    || |  |  | |   |          ||||   || |  ||| ||||||||||||| || || ||||| || |||||||| || || ||||| ||  |||| ||||| || ||||| ||||| || |||||||| ||||| ||  
tgtaacataccttcagtttctcccttgttttaagtttaccatgacaaagtggaagcctttggtggaactggcatgacatcatcttttgactc-taaatgcaGATTTATCAGCATCAACACAACAAACAAATGAGCTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGCTTCTTTCCTTATTATGCT-

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT3G60820.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcat-----tttccttcatgtatg--------tagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
  |     ||    | |   ||  || |     ||   ||     | |    ||||| | |   | | | |||   | |      ||| ||   ||| ||         |||| ||||| || |||||||||||||||||||||||||| || ||||| || || || || || || ||||| | |||||| || || ||||| || || |
gtgagttaaactttggt---cgtttgatcaattatctttcatccttcgcagtattagaaaatgatgaaagacttgtgtaagagtgttttctctgtgtttggtttccttcagATCTATCAACATCAGCATAACAAGCAGATGAGCTGTCCTGCAATGGCCCAGCTTCTCTCCAACACGCTTTATTTCAAGCGGTTTTTCCCCTACTATGCCT

upper sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
gtacagaatccagatactcgcgtgttggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcatt----ttccttcatgta--tgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
  |||   |     | || | |  |      |||       ||||   | | |   |    | |      | |   |||    || | | || ||  |  |||| |||||||| ||||| |||||||||||||| || || || ||||| |||||||| || || || || ||||| || || ||||| || |||||  | |
-cacaatctttcattgcttg-gcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattgcctttatttatttttatttcctgatttaattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359340|gb|DC939107.1|DC939107
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208364450|gb|DC954525.1|DC954525
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|18341261|gb|BJ173295.1|BJ173295
EST:     CGCCCGGCATCAG                         ATTTATCAGCACCAGCATACCAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100443206|gb|BY981832.1|BY981832
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208393290|gb|DC942444.1|DC942444
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100367799|gb|BY984789.1|BY984789
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208392219|gb|DC929480.1|DC929480
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208377412|gb|DC927072.1|DC927072
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162168953|gb|FC345635.1|FC345635
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208358314|gb|DC934535.1|DC934535
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208366765|gb|DC940079.1|DC940079
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208368331|gb|DC955528.1|DC955528
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100384610|gb|BY950600.1|BY950600
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|67717117|gb|BJ967376.1|BJ967376
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162168952|gb|FC345634.1|FC345634
EST:     CAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208379303|gb|DC927286.1|DC927286
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208368886|gb|DC947444.1|DC947444
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208371088|gb|DC955936.1|DC955936
EST:     TCAGGCGGACGTCCGATCTCTTCAGAAGAACCCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TCAGGCGGACGTCCGATCTCTTCAGAAGAA-CCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100442468|gb|BY963162.1|BY963162
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162186319|gb|FC361627.1|FC361627
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|37833061|gb|BJ591073.1|BJ591073
EST:     CAGGCGGACGTCCGATCTTCTTCAGAAGAACCTGGACGCCCGGCATCCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACA
genomic: CAGGCGGACGTCCGATC-TCTTCAGAAGAACCTGGACGCCCGGCAT-CAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACA
EST: gi|208358782|gb|DC942948.1|DC942948
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|67725639|gb|BJ975898.1|BJ975898
EST:     TTCAGAAGAACCTGGACGCCCGGCATCAG                         A-TTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100446728|gb|CJ971027.1|CJ971027
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208365808|gb|DC955439.1|DC955439
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|37840277|gb|BJ598285.1|BJ598285
EST:     CTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: CTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208373759|gb|DC952722.1|DC952722
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208367768|gb|DC944014.1|DC944014
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208374709|gb|DC948667.1|DC948667
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|100434760|gb|BY960826.1|BY960826
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162209736|gb|FC385670.1|FC385670
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208371358|gb|DC952119.1|DC952119
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208346662|gb|DC913308.1|DC913308
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|208388708|gb|DC941521.1|DC941521
EST:     TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: TTCAGGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
EST: gi|162186318|gb|FC361626.1|FC361626
EST:     GGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAG                         ATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA
genomic: GGCGGACGTCCGATCTCTTCAGAAGAACCTGGACGCCCGGCATCAGgtacagaatc ... atgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
                                    ttttccttcat  CT-rich tract
                   attaagaaa  TA-rich tract