1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtactcacaaggagttgcatgaatgttgatagctgccttaacatgcaaggactgttaagaagtcaatcaatgaatttttgaatggttatgggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAAATGAAAAGAATCAAGTCGTAG
species | Physcomitrella patens |
transcript | PP1S189_99V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG ATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAAEST: gi|162228632|gb|FC405452.1|FC405452
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
EST: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG ATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAAEST: gi|208391806|gb|DC942340.1|DC942340
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAA
EST: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTG ATGCTGCGGTCTNGATGTTGAA
genomic: TGTCATGACCACACCAGCAATCACCTTACCTGCAGACAAGGTTGTCTCTGgtacgcttcc ... ggtattgcagATGCTGCGGTCTTGATGTTGAA
caaggactgttaagaagtcaatcaatgaatttttgaatggttatgggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAAATGAAAAGAATCAAGTCGTAG
aatcaatgaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcacaaggagttgcatgaatgttgatagctgccttaacatgcaaggactgttaagaagtcaatcaatgaatttttgaatggttatgggtattgcagATGCTGCGGTCTTGATGTTGAAGAACAAGATTCACCGCATTCCTATTGTAAATGAAAAGAATCAAGTCGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - -aacatgc