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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attggtattcacattggttgtcatgattcttatgttcattcacttcggtatcacgtattttctaaaagtcctattgtactgaatgatgttgtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGACGGTGATTCCTGCTTTGTCGAGCAACGATTGTTACTTGGCGTACTTGC

Basic information

species Physcomitrella patens
transcript PP1S186_65V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162257528|gb|FC433558.1|FC433558
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: gi|162275893|gb|FC451454.1|FC451454
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: gi|162197911|gb|FC373653.1|FC373653
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: gi|100385385|gb|BY950977.1|BY950977
EST:     GTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: GTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: gi|162246878|gb|FC422767.1|FC422767
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
EST: gi|18367296|gb|BJ199378.1|BJ199378
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCCGGAGTCTC
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCC-GGAGTCTC
EST: gi|162165356|gb|FC341975.1|FC341975
EST:     AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAG                         GGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG
genomic: AGGATGTTGCTGTAATTATGTACACTAGTGGAAGTACGGGAATGCCGAAGgtaaagtcca ... gtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggtatcacgtattttctaaaagtcctattgtactgaatgatgttgtaatgacagGGAGTGATGATGTCGCATGGAAACCTCGTTGCGACTGTAGCCGGAGTCTCGACGGTGATTCCTGCTTTGTCGAGCAACGATTGTTACTTGGCGTACTTGC
              ttctaaa  putative branch site (score: 2)
          tattttctaaaagt  TA-rich tract