1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcacatcgcacacatagctgaattcagtattaccactgatcttttcagaactttccttacaactgataattttttaatcttactttctttgcaactgcgaatcttaatcttgtttcggtagaaggaagagttagctgatccatgtgtatgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAATTGACATTCTTGTTGCTGGCATTGGTACCGGTGGAACTGTAACTGGAG
species | Physcomitrella patens |
transcript | PP1S17_59V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACT-GACCCAGAGATTTGGGAAGATACAGCCGGAAAEST: gi|208377588|gb|DC922691.1|DC922691
genomic: AGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGA-CCAGAGATTTGGGAAGATACAGCCGGAAA
EST: CCAGCAAATCCTAAG GTTCANTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|67728207|gb|BJ978466.1|BJ978466
genomic: CCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|162263267|gb|FC438555.1|FC438555
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: ATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|67727983|gb|BJ978242.1|BJ978242
genomic: ATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|162263268|gb|FC438556.1|FC438556
genomic: CAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100389151|gb|BY952355.1|BY952355
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: TCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAAG GT-CATTTTGAGACTACTGGACCEST: gi|67574856|gb|BJ947680.1|BJ947680
genomic: TCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAA-Ggtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACC
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCEST: gi|162216431|gb|FC393264.1|FC393264
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACC
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100364747|gb|BY947888.1|BY947888
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCA-CTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCCGAAAAEST: gi|162219191|gb|FC396630.1|FC396630
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|208395218|gb|DC916027.1|DC916027
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: TCATACATGTTCC-ACAATTCGAGAACCCAGCAAATCCTNAG GTTCA-TTTGAGACTACTGGACCAGAGA-TTGGGAAGATACAGCCGGAAAAEST: gi|162150189|gb|FC326066.1|FC326066
genomic: TCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|208349136|gb|DC902170.1|DC902170
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|162154236|gb|FC330367.1|FC330367
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100352878|gb|BY945495.1|BY945495
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACEST: gi|162164732|gb|FC340779.1|FC340779
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGAC
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|162278511|gb|FC453973.1|FC453973
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: AGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100359503|gb|BY947020.1|BY947020
genomic: AGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: TCCCAACTCATACATGCTCCAAACA-TTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGEST: gi|162277367|gb|FC453173.1|FC453173
genomic: TCCCAACTCATACATGCTCCAA-CAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAG
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100410588|gb|BY992174.1|BY992174
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGGAAAEST: gi|67728189|gb|BJ978448.1|BJ978448
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: CTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAEST: gi|100392796|gb|BY971888.1|BY971888
genomic: CTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAA
EST: TCCCAACTCATACATGCTCCCAACA-TTCGAGAAACCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACEST: gi|18356110|gb|BJ188169.1|BJ188169
genomic: TCCCAACTCATACATGCTCC-AACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATAC
EST: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACEST: gi|67697830|gb|BJ958063.1|BJ958063
genomic: CTCCCAACTCATACATGCTCCAACAATTCGAGAACCCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGAC
EST: CCAGCAAATCCTAAG GTTCATTTTGAGACTACTGGACCAGAGATTTGGGAANGATACAGCCGGAAA
genomic: CCAGCAAATCCTAAGgtatcacatc ... tgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAA-GATACAGCCGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcacatcgcacacatagctgaattcagtattaccactgatcttttcagaactttccttacaactgataattttttaatcttactttctttgcaactgcgaatcttaatcttgtttcggtagaaggaagagttagctgatccatgtgtatgtcgtgtagGTTCATTTTGAGACTACTGGACCAGAGATTTGGGAAGATACAGCCGGAAAAATTGACATTCTTGTTGCTGGCATTGGTACCGGTGGAACTGTAACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA