Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcacgaattatcctatctgtatcttcactgtatcctcttccgatctgtgccgtgaatgctgcggatctaatggtactctgcactgcctcgataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGACTTGAAGGAACTTGTTGCCAAGTTTATCCCTGAGGTTATTGGGAAGGAAA

Basic information

species Physcomitrella patens
transcript PP1S17_306V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376861|gb|DC918774.1|DC918774
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208399084|gb|DC904493.1|DC904493
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|37844843|gb|BJ602851.1|BJ602851
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208344601|gb|DC909160.1|DC909160
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162268511|gb|FC444384.1|FC444384
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208389506|gb|DC929431.1|DC929431
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162276956|gb|FC453054.1|FC453054
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|37821343|gb|BJ579409.1|BJ579409
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|100426483|gb|BY958921.1|BY958921
EST:     C-AACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAAGGAAGCCCAGACTTGTGA
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAA-GGAAGCCCAGACTTGTGA
EST: gi|162276316|gb|FC452423.1|FC452423
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208400702|gb|DC904880.1|DC904880
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|18343480|gb|BJ175518.1|BJ175518
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208399117|gb|DC908226.1|DC908226
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208351416|gb|DC922111.1|DC922111
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162264535|gb|FC440857.1|FC440857
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|18339627|gb|BJ171654.1|BJ171654
EST:     CCAANCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208370232|gb|DC952054.1|DC952054
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|67718647|gb|BJ968906.1|BJ968906
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162264534|gb|FC440856.1|FC440856
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|37837711|gb|BJ595719.1|BJ595719
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162268510|gb|FC444383.1|FC444383
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208354480|gb|DC953858.1|DC953858
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208356062|gb|DC918386.1|DC918386
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162279348|gb|FC455271.1|FC455271
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162277303|gb|FC453733.1|FC453733
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|67727072|gb|BJ977331.1|BJ977331
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162278252|gb|FC454591.1|FC454591
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|67724806|gb|BJ975065.1|BJ975065
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208361818|gb|DC939040.1|DC939040
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162227858|gb|FC403666.1|FC403666
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAGTCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208387862|gb|DC929206.1|DC929206
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|18340714|gb|BJ172744.1|BJ172744
EST:     CCAACCAAATTAAGAAGACTTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208349984|gb|DC910219.1|DC910219
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162277304|gb|FC453734.1|FC453734
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|100417991|gb|BY993284.1|BY993284
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|18338554|gb|BJ170578.1|BJ170578
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|37830856|gb|BJ588868.1|BJ588868
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208362474|gb|DC943729.1|DC943729
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162227859|gb|FC403667.1|FC403667
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAGTCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208376911|gb|DC906852.1|DC906852
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTATGCGGAAGATGAGGGAAATCATGACCAANGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208397993|gb|DC920725.1|DC920725
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208378354|gb|DC923025.1|DC923025
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208367617|gb|DC943964.1|DC943964
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|67716290|gb|BJ966550.1|BJ966550
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208377740|gb|DC940852.1|DC940852
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|208396266|gb|DC924060.1|DC924060
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162279347|gb|FC455270.1|FC455270
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|37822676|gb|BJ580742.1|BJ580742
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162219974|gb|FC396789.1|FC396789
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
EST: gi|162219973|gb|FC396788.1|FC396788
EST:     CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAG                         ATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC
genomic: CCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 51

AGACAACTACCAGCTCCGCATCTTCTGCATTGCGTTCACTAAGAAGAGGCCCAACCAAATTAAGAAGACCTGCTACGCGCAGAGCAGCCAAATCCGCCAGgtttgcccta ... ataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGACTTGAAGGAACTTGTTGCCAAGTTTATCCCTGAGGTTATTGGGAAGGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgccgtgaatgctgcggatctaatggtactctgcactgcctcgataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGACTTGAAGGAACTTGTTGCCAAGTTTATCCCTGAGGTTATTGGGAAGGAAA
                   atctaat  putative branch site (score: 51)
                   atctaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcacgaattatcctatctgtatcttcactgtatcctcttccgatctgtgccgtgaatgctgcggatctaatggtactctgcactgcctcgataagtgcagATTAGGCGGAAGATGAGGGAAATCATGACCAAGGAAGCCCAGACTTGTGACTTGAAGGAACTTGTTGCCAAGTTTATCCCTGAGGTTATTGGGAAGGAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgcg