1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcccaatttttgtagctttggttttgtataaaatggggtacgatattctgtggatacgccgtagcccattaatgctatacttttgtcgtgtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG
species | Physcomitrella patens |
transcript | PP1S174_123V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGACTCAAGGGCTGTCA-TTGTATCGCAGGAAAAG CGANTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208377763|gb|DC940875.1|DC940875
genomic: GTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGANCGACAACEST: gi|208378846|gb|DC927548.1|DC927548
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208396538|gb|DC915850.1|DC915850
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208366958|gb|DC951445.1|DC951445
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208358259|gb|DC939399.1|DC939399
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208352848|gb|DC917812.1|DC917812
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208382176|gb|DC914823.1|DC914823
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCCCANGAAAAN CGATNGCCCTT-CCACTGEST: gi|208381088|gb|DC903916.1|DC903916
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTG
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|162254449|gb|FC430662.1|FC430662
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208397850|gb|DC916171.1|DC916171
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: ATGTANGTGACTCAAGGGCTGTCA-TTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208354531|gb|DC953881.1|DC953881
genomic: ATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCCATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGANTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208386007|gb|DC956523.1|DC956523
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208355611|gb|DC906591.1|DC906591
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGANCGACAACEST: gi|208386792|gb|DC937184.1|DC937184
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|100412818|gb|BY992451.1|BY992451
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCANGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGGAC-ACAAAACCAA-TCGATCGGATGAACGACAEST: gi|208364824|gb|DC957875.1|DC957875
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTG-ACCACAAA-CCAAATCGATCGGATGAACGACA
EST: ATGTAGGNGACTCAAGGGCTGTCA-TTGTATCGCA-GAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208356189|gb|DC902225.1|DC902225
genomic: ATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCACTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208357765|gb|DC902303.1|DC902303
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208351894|gb|DC913793.1|DC913793
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208390818|gb|DC938397.1|DC938397
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCCTTTCCACTGACCACAAACCAAATCNATCGGATGAACGACAAEST: gi|37852052|gb|BJ610060.1|BJ610060
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCC-TTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAA
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208354285|gb|DC957463.1|DC957463
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|100404154|gb|BY955282.1|BY955282
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCANCAA-CCAAATCGATCGGATGAACGACAAEST: gi|208377647|gb|DC932183.1|DC932183
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCA-CAAACCAAATCGATCGGATGAACGACAA
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|208361054|gb|DC946687.1|DC946687
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACEST: gi|37832174|gb|BJ590186.1|BJ590186
genomic: TGTTGCCAATGTAGGTGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
EST: TGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAG CGATTGCCNTTTCCACTGACCACAANCCAAATCGATCGGATGAACGACAAC
genomic: TGACTCAAGGGCTGTCATTTGTATCGCAGGAAAAGgtgacagcgt ... gtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAAC
attctgtggatacgccgtagcccattaatgctatacttttgtcgtgtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG
cattaat putative branch site (score: 3)
tgctttc putative PPT
tatactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcccaatttttgtagctttggttttgtataaaatggggtacgatattctgtggatacgccgtagcccattaatgctatacttttgtcgtgtgctttcagCGATTGCCCTTTCCACTGACCACAAACCAAATCGATCGGATGAACGACAACGCATTGAAAAAGCTGGAGGAGTGGTCATGTGGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG