Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctgtggatttgatgcttcaaagaattaggcattgagatttgaacactgcaccgtgcattttcgtacattgtgtccctaagccagtacaattctaacagcaaatttttcttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAGGTATCACTGATTGGTTAGTCTAAATGTGACTGCCTGACTGATTAAGGAA

Basic information

species Physcomitrella patens
transcript PP1S169_19V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228482|gb|FC404431.1|FC404431
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67723878|gb|BJ974137.1|BJ974137
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|208387340|gb|DC933091.1|DC933091
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162239540|gb|FC417979.1|FC417979
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18331275|gb|BJ163284.1|BJ163284
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162201620|gb|FC378282.1|FC378282
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67722227|gb|BJ972486.1|BJ972486
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162201619|gb|FC378281.1|FC378281
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67571052|gb|BJ943876.1|BJ943876
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAA
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAA
EST: gi|15327237|gb|BI487790.1|BI487790
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162268529|gb|FC444402.1|FC444402
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162241701|gb|FC417228.1|FC417228
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67716842|gb|BJ967101.1|BJ967101
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18374914|gb|BJ206492.1|BJ206492
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18341200|gb|BJ173233.1|BJ173233
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162242312|gb|FC416094.1|FC416094
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|37822905|gb|BJ580971.1|BJ580971
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67703717|gb|BJ963950.1|BJ963950
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAA
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAA
EST: gi|67700988|gb|BJ961221.1|BJ961221
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|208377368|gb|DC906637.1|DC906637
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67721910|gb|BJ972169.1|BJ972169
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|208364047|gb|DC947235.1|DC947235
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|37833508|gb|BJ591520.1|BJ591520
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162243575|gb|FC419512.1|FC419512
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|15327272|gb|BI487858.1|BI487858
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162268530|gb|FC444403.1|FC444403
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67725360|gb|BJ975619.1|BJ975619
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18356574|gb|BJ188633.1|BJ188633
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAG
EST: gi|162221374|gb|FC398535.1|FC398535
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18359686|gb|BJ191747.1|BJ191747
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18343709|gb|BJ175747.1|BJ175747
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67709802|gb|BJ965618.1|BJ965618
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18349005|gb|BJ181054.1|BJ181054
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGCTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67709312|gb|BJ965128.1|BJ965128
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67578123|gb|BJ950290.1|BJ950290
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67694360|gb|BJ954593.1|BJ954593
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|19781336|gb|BQ039687.1|BQ039687
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162277116|gb|FC453338.1|FC453338
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|208395101|gb|DC920514.1|DC920514
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162220442|gb|FC395979.1|FC395979
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|37835973|gb|BJ593985.1|BJ593985
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGCTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|18342387|gb|BJ174422.1|BJ174422
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162261378|gb|FC437811.1|FC437811
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162204729|gb|FC381125.1|FC381125
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162271874|gb|FC448084.1|FC448084
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|67723388|gb|BJ973647.1|BJ973647
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
EST: gi|162243574|gb|FC419511.1|FC419511
EST:     CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAG                         GAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG
genomic: CACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 79

GCAATACTGCATTTCTTGTGCTATCCATTCACACGTCGTTCGTGTGAGATCACGGGAGGCACGAAGGATCCGTGAGCCCCCGCAGAGGTTTCGCCGCAAGgtcagctgtg ... ttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAGGTATCACTGATTGGTTAGTCTAAATGTGACTGCCTGACTGATTAAGGAA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattgtgtccctaagccagtacaattctaacagcaaatttttcttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAGGTATCACTGATTGGTTAGTCTAAATGTGACTGCCTGACTGATTAAGGAA
                          ttctaac  putative branch site (score: 79)
                                       tttttcttctgttc  putative PPT
                                    aaatttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagctgtggatttgatgcttcaaagaattaggcattgagatttgaacactgcaccgtgcattttcgtacattgtgtccctaagccagtacaattctaacagcaaatttttcttctgttcagGAGGACGGACCCCCACGCGTTCAGGGCGCCCCCGGTGCTAAGGCCTAAAAGGTATCACTGATTGGTTAGTCTAAATGTGACTGCCTGACTGATTAAGGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA