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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcattccttcactaattgaagtagttctttcctcattaccacagcagtgtatgggagatgtattaatatgtcaattgaggatagtgtacagaggtctgctattgattcagatggttgttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGACAGAACACACTTTTATCCACCCCCGCTGTGTCTTCAATCATCCGAAACC

Basic information

species Physcomitrella patens
transcript PP1S168_70V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100368990|gb|BY984972.1|BY984972
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|162194861|gb|FC370525.1|FC370525
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|162162825|gb|FC338087.1|FC338087
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|100405914|gb|BY991447.1|BY991447
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|162193559|gb|FC370462.1|FC370462
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|208384123|gb|DC911259.1|DC911259
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAN                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
EST: gi|162164264|gb|FC342079.1|FC342079
EST:     ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAG                         ATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA
genomic: ACATTGTTGTATCTGGAGATGGCCGTTACTGGTCGACGGAAGCTATTCAGgttggtcatt ... gttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattgaggatagtgtacagaggtctgctattgattcagatggttgttcttgcagATCGTCATCAAGATCGCCGCTGCTAATGGCGTAAAGAGAGTGTGGGTCGGACAGAACACACTTTTATCCACCCCCGCTGTGTCTTCAATCATCCGAAACC
                            tattgat  putative branch site (score: 3)
                                           ttgttctt  putative PPT
                            tattgatt  TA-rich tract