1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attgcatttttaggtgggacttacggacggattctcaaagaactggattgaagcactggtattgtggtgttgaattttaccatgttgcctttccatgcagGCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCCAGAAGATGGGGCAGGAGATCTGATCCGGCAAATCAACGCGAGGCTGGCTGCAC
species | Physcomitrella patens |
transcript | PP1S15_44V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTATGATTGATCGCCGCATGGGAATTCATGGTCACCCCCTTGAGATTCAN GCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCEST: gi|162194283|gb|FC368505.1|FC368505
genomic: GTATGATTGATCGCCGCATGGGAATTCATGGTCACCCCCTTGAGATTCAGgttcgtcaac ... ttccatgcagGCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGC
EST: GTATGATTGATCGCCGCATGGGAATTCATGGTCACCCCCTTGAGATTCAG GCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCCAGAA
genomic: GTATGATTGATCGCCGCATGGGAATTCATGGTCACCCCCTTGAGATTCAGgttcgtcaac ... ttccatgcagGCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCCAGAA
gattgaagcactggtattgtggtgttgaattttaccatgttgcctttccatgcagGCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCCAGAAGATGGGGCAGGAGATCTGATCCGGCAAATCAACGCGAGGCTGGCTGCAC
ttgcctttcc CT-rich tract
ttgaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcatttttaggtgggacttacggacggattctcaaagaactggattgaagcactggtattgtggtgttgaattttaccatgttgcctttccatgcagGCCCTGTTTTACCAAGCTTTGCGATGTGCCCGGGAAATTCTCGTGCCAGAAGATGGGGCAGGAGATCTGATCCGGCAAATCAACGCGAGGCTGGCTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa