Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagtgggcactcttgagttggagtatctcatgcggctgaatgtcctccttgccctgtggttggggccaaactttccatcacacggtcagaattatccctagacgattgcgccagtcaattgacctgtgtgttatggtaaccactatttactgtgattctatcagAGTGAGCGGGTGCACAAAGTGTTGGAGTATGTGAATTTGATCCACCAATATTGCTCGGTGATGGGAATGGACTTCTTTCCACTTCTTGCTGAGATTCATC

Basic information

species Physcomitrella patens
transcript PP1S153_95V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159868|gb|FC335913.1|FC335913
EST:     GGAGGCTGGAGGAGTATCAAGCTCAGTTAACAGCCTTACAGAAAGAGAAG                         AGTGAGCGGGTGCACAAAGTGTTGGAGTATGTGAATTTGATCCACCAATAT
genomic: GGAGGCTGGAGGAGTATCAAGCTCAGTTAACAGCCTTACAGAAAGAGAAGgtaaggagtg ... attctatcagAGTGAGCGGGTGCACAAAGTGTTGGAGTATGTGAATTTGATCCACCAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccagtcaattgacctgtgtgttatggtaaccactatttactgtgattctatcagAGTGAGCGGGTGCACAAAGTGTTGGAGTATGTGAATTTGATCCACCAATATTGCTCGGTGATGGGAATGGACTTCTTTCCACTTCTTGCTGAGATTCATC
                        tggtaac  putative branch site (score: 2)
                                              ttctatc  putative PPT
                                actattta  TA-rich tract