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...ttctcaagttttatggtatggagaacagcttctcgtaatattctcagcagctcaatgccaagttgaaagttctttaacagttgtggtttgctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATGG
species | Physcomitrella patens |
transcript | PP1S152_87V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATEST: gi|162244981|gb|FC424939.1|FC424939
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATEST: gi|100352594|gb|BY945350.1|BY945350
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATEST: gi|100419828|gb|BY957728.1|BY957728
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: TAGAGTGTCACTTGGAACCGACTNCA-GAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATEST: gi|162159476|gb|FC336265.1|FC336265
genomic: TAGAGTGTCACTTGGAACCGACT-CAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATEST: gi|100397210|gb|BY972385.1|BY972385
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
EST: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAG AGTGCCGTAGCTCGAGAAATATCTGGAGCTGGATTGGATGTCATTGAATAT
genomic: TTAGAGTGTCACTTGGAACCGACTCAAGAGTATCTGCTAAATCAATTCAGgtataaacaa ... ctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATAT
agcagctcaatgccaagttgaaagttctttaacagttgtggtttgctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATGG
ctttaac putative branch site (score: 3)
tttgcttt putative PPT
ttctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcaagttttatggtatggagaacagcttctcgtaatattctcagcagctcaatgccaagttgaaagttctttaacagttgtggtttgctttgtatagAGTGCCGTAGCTCGAGGAATATCTGGAGCTGGATTGGATGTCATTGAATATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA