1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtcggatattttgcagacaattcgtctaaattgaagacttgattgtggcactcggattgttgtggcaccagtgctctttgtttacattttgtcagatcagcaatattttttgacttttaaatgaactgttgcattgttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAAAAGAACAACGTGGCTTTGGACATAGTGAGTTTCGGTGAAGATGATGGT
species | Physcomitrella patens |
transcript | PP1S14_318V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAEST: gi|162235944|gb|FC411687.1|FC411687
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAEST: gi|162159573|gb|FC335751.1|FC335751
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAEST: gi|18328677|gb|BJ160682.1|BJ160682
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAEST: gi|100400831|gb|BY972965.1|BY972965
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
EST: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAG TCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
genomic: CATCGCCAGAACAAGCATCAGCGACAGAGAATTGTTCTTTTCGCGGGCAGgtaagtcgga ... ttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAA
tcagatcagcaatattttttgacttttaaatgaactgttgcattgttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAAAAGAACAACGTGGCTTTGGACATAGTGAGTTTCGGTGAAGATGATGGT
ttttgac putative branch site (score: 3)
aatattttttgacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcggatattttgcagacaattcgtctaaattgaagacttgattgtggcactcggattgttgtggcaccagtgctctttgtttacattttgtcagatcagcaatattttttgacttttaaatgaactgttgcattgttatccgcagTCCTGTTCTGGCAGATAAGGCGGTCCTGGAGGGAATGGGAAAGAAGTTGAAAAAGAACAACGTGGCTTTGGACATAGTGAGTTTCGGTGAAGATGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG