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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttccatttagataaccttcagttcttatctgagcacaacttatttgaaatggtctacgaattcgtgactaatcactgtgatcgcttctgcagGGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTGTATCACCAGGATATCGAATATGATGCGTCACGTATAGTTGGGTTTGAGG

Basic information

species Physcomitrella patens
transcript PP1S140_64V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162193436|gb|FC370989.1|FC370989
EST:     TGACCTATGACCCCGGGTTCTCTGTCGGTTTCAAGGCGCCACTGAAGAAG                         GGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTG
genomic: TGACCTATGACCCCGGGTTCTCTGTCGGTTTCAAGGCGCCACTGAAGAAGgtttgtattt ... gcttctgcagGGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTG
EST: gi|162151385|gb|FC327514.1|FC327514
EST:     TGACCTATGACCCCGGGTTCTCTGTCGGTTTCAAGGCGCCACTGAAGAAG                         GGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTG
genomic: TGACCTATGACCCCGGGTTCTCTGTCGGTTTCAAGGCGCCACTGAAGAAGgtttgtattt ... gcttctgcagGGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttatttgaaatggtctacgaattcgtgactaatcactgtgatcgcttctgcagGGTGGTGAACTGAAGCACTTCATAAACAACCATCTTTCCTTTGTTGTGTTGTATCACCAGGATATCGAATATGATGCGTCACGTATAGTTGGGTTTGAGG
                            gactaat  putative branch site (score: 2)
                                           tcgcttct  putative PPT
     tttgaaat  TA-rich tract