1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctaaaaacgtgggatttagagttcgttacagctgcttgttgatcgggttgtagctcgtcactttttcaaacactaagatctcatgggtatcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTCCTTGGGGGTGCGTTCAATGCAAGTGGAAATGTGAATCCCGCTGCAGAGG
species | Physcomitrella patens |
transcript | PP1S140_172V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGGCGAANTAACTGTANTTGCTCTAGGTCCCCTCACCAATATTGCACTG GCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCANT-GGTTGTCEST: gi|208357242|gb|DC910653.1|DC910653
genomic: CAGGCGAAGTAACTGTAGTTGCTCTAGGTCCCCTCACCAATATTGCACTGgttagttttt ... tcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTC
EST: CAGGCGAAGTAACTGTAGTTGCTCTAGGTCCCCTCACCAATATTGCACTG GCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATNGGTTGTCEST: gi|208358940|gb|DC939224.1|DC939224
genomic: CAGGCGAAGTAACTGTAGTTGCTCTAGGTCCCCTCACCAATATTGCACTGgttagttttt ... tcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTC
EST: CAGGCGAAGTAACTGTAGTTGCTCTAGGTCCCCTCACCAATATTGCACTG GCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTC
genomic: CAGGCGAAGTAACTGTAGTTGCTCTAGGTCCCCTCACCAATATTGCACTGgttagttttt ... tcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTC
gggttgtagctcgtcactttttcaaacactaagatctcatgggtatcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTCCTTGGGGGTGCGTTCAATGCAAGTGGAAATGTGAATCCCGCTGCAGAGG
tatctttt CT-rich tract
tttttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaaaacgtgggatttagagttcgttacagctgcttgttgatcgggttgtagctcgtcactttttcaaacactaagatctcatgggtatcttttacagGCCATCCAAAAGGATCCAAACTTTGTCAAGAACATTGGGCAATTGGTTGTCCTTGGGGGTGCGTTCAATGCAAGTGGAAATGTGAATCCCGCTGCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG