1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttcggccgtaagcttttctttttcttcgtataggtgcaagcctcaagggtcttgctgagctatgatggcctcaaatgttgcttctgacaggtagctgcttgatgtgctacctagtgtttggtggctacccacgtaactaacttctctattgaaactgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGCACATCCTTGTTTCAGTTGGTGGTCGTGCAACAGTTCCTAACATTCCCG
species | Physcomitrella patens |
transcript | PP1S13_127V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGEST: gi|100366004|gb|BY967247.1|BY967247
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: AGTCACTGCTGCAAAAGTCCGA-GTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTEST: gi|162247058|gb|FC422232.1|FC422232
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGT
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGEST: gi|208367054|gb|DC935910.1|DC935910
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATANAGGGTCGTGGCAAG ATTGTTGATGCGCATACNGTAAANGTGAAGGGCAAGCAATATACAACCCAGEST: gi|208382201|gb|DC914834.1|DC914834
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTAAAGGTGAAGGGCAAGCAATATACAACCCAGEST: gi|67573975|gb|BJ946799.1|BJ946799
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCNCATACGGTANAGGTGAAGGGCAAGCAATATACAACCCAGEST: gi|100415484|gb|BY992866.1|BY992866
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGEST: gi|100389613|gb|BY952419.1|BY952419
genomic: AGTCACTGCTGCAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
EST: GTCACTGCTGCAAAAAGTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAG ATTGTTGATGCGCATACGGTAGAGGTAAAGGGCAAGCA-TATACAACCCAG
genomic: GTCACTGCTGCAAAA-GTCCGAAGTCGACCTAATAGAGGGTCGTGGCAAGgttcggccgt ... actgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAG
acctagtgtttggtggctacccacgtaactaacttctctattgaaactgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGCACATCCTTGTTTCAGTTGGTGGTCGTGCAACAGTTCCTAACATTCCCG
tattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcggccgtaagcttttctttttcttcgtataggtgcaagcctcaagggtcttgctgagctatgatggcctcaaatgttgcttctgacaggtagctgcttgatgtgctacctagtgtttggtggctacccacgtaactaacttctctattgaaactgatacagATTGTTGATGCGCATACGGTAGAGGTGAAGGGCAAGCAATATACAACCCAGCACATCCTTGTTTCAGTTGGTGGTCGTGCAACAGTTCCTAACATTCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG