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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttattacatgacaatcaccaagtcatcacacgaggaccaatgtatttgcccacatttcttgaagctgtagattggatattcccgttattgaaatcgattcgtcgtcgctgacgaatttgttgtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGTGCCGATTTCCAGTGCTGACTCCAAACCTTCGAGGTTTTGAGGCAGCGA

Basic information

species Physcomitrella patens
transcript PP1S138_43V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362066|gb|DC950501.1|DC950501
EST:     GTGTCCCCGAAATGGGTGCNTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: GTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: gi|162189221|gb|FC366730.1|FC366730
EST:     TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: gi|208361217|gb|DC957686.1|DC957686
EST:     GAAGCCACCAGCTTCGTGTTCCCCGAAATGGGTGCNTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: GAAGCCACCAGCTTCGTG-TCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: gi|162207542|gb|FC383995.1|FC383995
EST:     TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: gi|162158070|gb|FC334978.1|FC334978
EST:     TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: TACCAGTTGTGGAAGCCACCAGCTTCGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
EST: gi|208379917|gb|DC927643.1|DC927643
EST:     CGTGTCCCCGAAATGGGTGCNTCAG                         CTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG
genomic: CGTGTCCCCGAAATGGGTGCCTCAGgtatttatta ... gtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcccgttattgaaatcgattcgtcgtcgctgacgaatttgttgtattggcagCTTGCGGATGCGAAAGACGTCATGGCTGACGTCCGGCATTGTACGAGTAGGTGCCGATTTCCAGTGCTGACTCCAAACCTTCGAGGTTTTGAGGCAGCGA
                             cgctgac  putative branch site (score: 3)
        ttattgaaat  TA-rich tract