Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA

Basic information

species Physcomitrella patens
transcript PP1S136_29V6.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os06g48750.1 (Oryza sativa), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                       ||   | | |||   ||  ||  |   |  || ||| |  |    |  |   |  |    ||  |     |  |    |||  |    ||  || | |||  ||||||||||| || |||||||| || ||    ||| | |||||||||||||||||||| || ||||| || || || ||||| |||||| | ||||||||||
---------------------------------------attggactattct--gaaaatctgtttgacatgtttctgttattccttctattacgtgc-ttcatatctatagtaatattaatttcccttttgttatttg--cagATTTATGATATCTTCCAGCTCCTCCCGTCAAAGATCCAAGTTGGTGTGTTCTCTGCTACAATGCCCCCTGAGGCCCTTGAGATCACCCGTAAATTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G027995_T01 (Zea mays), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                             |||   |||      | | |    |  |    |  | | | | | | |   || |      || |||   |   |  ||| |  |||||||  ||   || ||||     |||||||||||||||| ||||||||||| ||    ||| |||| ||||| || |||||||| ||||||||||| || || ||||| || ||| | || |||||||
-----------------------------aac---catatatccagtctcttggagttgctacaacgcgctatctgtttatggt-----actctgat--tcatttatgcctgctgacttatttc---tttggtgga--atgcagATTTATGACATCTTCCAGCTTCTGCCATCCAAGATTCAGGTTGGAGTCTTCTCTGCTACCATGCCACCTGAGGCCCTTGAGATTACCCGCAAGTTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA07G00950.1 (Glycine max), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaa-gtgatctttatacttgctcgacagc-tgtgaaagttggtgctgctta-----ttgac-ttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                                       || | ||| ||    || |||||   | || |||||  |   | | ||    |  |||      ||||| ||  |  |  || |||  ||  ||||||| |||||||| || ||||| || ||    ||  |||| ||||| ||||||||||| || |||||||| ||||| ||||| || || ||||| |||||||
---------------------------------------------------agttataagaagaaatacaatatttatttat-ctggacaggatacaagaatttccccctcttccatgcttgacattgtgaaaattttggttggtgttgcagATCTATGACATCTTTCAGCTGCTGCCATCCAAAATTCAGGTTGGAGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACAAGAAAGTTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggt----gagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                                           || | || |  |  | |   ||  || |   |        ||   | |     || ||||   ||  | ||| |    |  || | ||||| |||||||| |||||||||||||| |  ||| | ||||||||||||||||| || || |||||||| ||||||||||| ||||| || || |||||||
----------------------------------------------------------gtatgcaaatatttctcagtgtt--tcaattcc-------attctcgttatagtttaacttgaatctcactggtttctgggttttttcagATCTATGACATATTCCAGCTTCTTCCACCAAAGATCCAAGTTGGTGTGTTCTCCGCAACAATGCCACCAGAAGCTCTTGAGATCACAAGGAAGTTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgt-tcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                          || || | | ||  |   |  | |  |   || | |  ||      | | | |  |  |||||  ||  | |||  ||           ||||| || ||||||| |||||||| ||||||||||| || |  ||| |||| ||||| ||||||||||| || ||||| || |||||| | || ||||| |||||||||||||
----------------------------------------gtttgttatcttcttcaaagtttgaatctaccctctgtggttatct--ctgatattgac-ttggttttg--tgttgtttt---------ctggtgaatt-tgcagATCTATGACATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGAGTGTTCTCTGCGACAATGCCTCCGGAAGCTTTGGAGATCACAAGAAAATTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: AT1G72730.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                             ||  || ||  | ||     | | |  |||    || |||     |||  ||| |    |    || ||  ||||    |  |||  |    ||| ||||| || ||||| ||||||||||||||    ||| |||| |||||||| |||||||| || ||||| |||||||| ||||| ||||| || || |||||||
-------------------------------------------gtttaatcttgtttaatctcccattcacattttctttttctct----ctgataaaatcaa-gtcatttgtt--ctta---taatttgatttctctgt-cagATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTTGGTGTTTTCTCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv04s0008g01000.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagc-tgtgaaagttggtgctg-cttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                           | | | |    | |   ||| |  |  | | |    || ||      | |||| |   |  |||||  || ||| |||    | ||     |   ||  |||||| ||||| ||||||||| | || ||    ||| |||| ||||| |||||||||||||| |||||||| || || ||||| ||||| || ||||||||||
-------------------------------------------tttagctatgtggttgcaagcattttgt-tgtgggttttctgactttcatgtgcattctaatgctgatttcttgtcttgatactga--aatttcatttggcagATCTATGATATTTTCCAGTTGCTGCCATCAAAGATTCAGGTTGGGGTGTTCTCTGCCACGATGCCACCTGAGGCCCTTGAGATCACAAGGAAATTCATGA

upper sequence: PP1S136_29V6.4 (Physcomitrella patens), 3'ss of exon 4
lower sequence: Vv11s0016g01920.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgtaaaggatttttcaagttcagtagaacttgcatgatcttattgttcctggatgataaggaagtgatctttatacttgctcgacagctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                                     | || || ||    |||  |  ||    |   | ||  | |     || ||     ||   |||  |    ||  |  | | |  | || ||          ||||||| ||||| |||||||| || || ||    ||  |||||||||| |||||||||||||| ||||||||||| || ||||| || || || || || ||||
-------------------------------------ttatttttttaactctgtgttgtattccaagaacctcaacaacctttcaactttaatgc--gtttatatcactgttctaat-aaattagtttcttc----cttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTCTCTGCCACAATGCCACCCGAGGCCCTTGAGATTACAAGGAAGTTTATGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100352894|gb|BY945503.1|BY945503
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTTCA-GTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTGGTGTGTT
EST: gi|208346237|gb|DC905226.1|DC905226
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGNATCAG                         ATTTATGACATTTTCNAGCTTCTTCCC-AGAN-CTNCANGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67718771|gb|BJ969030.1|BJ969030
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT
EST: gi|208391822|gb|DC937998.1|DC937998
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATT-ATGACATTTTCCAGCTTCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCT
EST: gi|100404170|gb|BY955290.1|BY955290
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGAT-CAAAGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67726507|gb|BJ976766.1|BJ976766
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCAAGTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGC-TTCAAGTTGGTGTGTT
EST: gi|100389111|gb|BY952315.1|BY952315
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTCCTTCCCCAGAAGCTTCAA-TTGGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|100402416|gb|BY954825.1|BY954825
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100410712|gb|BY992230.1|BY992230
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208365823|gb|DC951058.1|DC951058
EST:     GGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCCAGAAGCTTCAAGTTGGTGTGTT
genomic: GGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT-CCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100375014|gb|BY949152.1|BY949152
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTNCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCA-GT-GGTGNTGT
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTGGTG-TGT
EST: gi|100370606|gb|BY948427.1|BY948427
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGNTGTGT-
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|208370572|gb|DC936116.1|DC936116
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGNATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTNCANGTTGGTGTGT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGT
EST: gi|100384758|gb|BY950748.1|BY950748
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTTCA-GGATCAG                         ATTTATGACATTTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTC
EST: gi|100385372|gb|BY950964.1|BY950964
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|162164328|gb|FC340999.1|FC340999
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208373819|gb|DC936590.1|DC936590
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCT
EST: gi|100447847|gb|CJ972146.1|CJ972146
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTNCANGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208388160|gb|DC933210.1|DC933210
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATNCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCT
EST: gi|208386845|gb|DC941563.1|DC941563
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGG-ATTCAAGNATCAG                         ATTTATGACATTTTCCAGCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT
EST: gi|208382954|gb|DC927704.1|DC927704
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100402371|gb|BY954802.1|BY954802
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAGGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100397827|gb|BY990421.1|BY990421
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTNCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100445896|gb|CJ970195.1|CJ970195
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTNCANGTTGGTGTGT-C
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|22491759|gb|BU051682.1|BU051682
EST:     TCTTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100402544|gb|BY954888.1|BY954888
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGAATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTT
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGA-TCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT
EST: gi|208355740|gb|DC910534.1|DC910534
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAA
EST: gi|67719313|gb|BJ969572.1|BJ969572
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|162162449|gb|FC339193.1|FC339193
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGC
EST: gi|100362773|gb|BY947521.1|BY947521
EST:     CGTGCTGGACGAAGCTGACGNAATGCTCTCGAGGGGATTTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCNAGTTGGGTGTGT-
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATT-CAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGG-TGTGTT
EST: gi|208352225|gb|DC906314.1|DC906314
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAA
EST: gi|208363579|gb|DC939770.1|DC939770
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGAAT-CAAGGATCAG                         ATT-ATGACATTTTCNAGCTNCTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTC
EST: gi|100352674|gb|BY945390.1|BY945390
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208391403|gb|DC941825.1|DC941825
EST:     TCGTGCTGGACGAAGCTGACNAA-TGCTCTCGAGGGAAT-CAAGNATCAN                         ATT-ATGACATTT-CCAGCTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT
EST: gi|100395334|gb|BY953685.1|BY953685
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTTCCCCAGA-GCTTCAAGGTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTT-CCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100446197|gb|CJ970496.1|CJ970496
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAN                         ANTTATGACATTTTCCAGCTTCTNCCC-ANAANCTNCAANT-GGTGTGT-C
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208371552|gb|DC936273.1|DC936273
EST:     TCGTGCTGGACGAAGCTGACGAA-TGCTCTCGAGGGGATNCAAGNATCAG                         ATTTATGACATTTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTC
EST: gi|100394678|gb|BY989878.1|BY989878
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGNATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGG-ATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208370689|gb|DC936839.1|DC936839
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTTCANGTNGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100447473|gb|CJ971772.1|CJ971772
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATNCAAGGATCAG                         ATT-ATGACATTTTCCAGCTTCT-CCCCAGAAGCTNCAAGTTGGTGTG
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTG
EST: gi|67719815|gb|BJ970074.1|BJ970074
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTCCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208388732|gb|DC941531.1|DC941531
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCANGNATCAA                         ATTTATGACATTTTCCAGCTTCT-CCCCANAA-CTTCA
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCA
EST: gi|208375347|gb|DC940457.1|DC940457
EST:     TCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|67718006|gb|BJ968265.1|BJ968265
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100397563|gb|BY990289.1|BY990289
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|100396932|gb|BY953900.1|BY953900
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGGATTCA-GGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTCCAAGTTGGTGTGTTC
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGG-ATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208360428|gb|DC930795.1|DC930795
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGAT-CAAGGATCAA                         ATTTATGACATTT-CCAGCTNCTTCCC-ANAA-CTTCANGTTGGT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGT
EST: gi|100409416|gb|BY992000.1|BY992000
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCC-AGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208379099|gb|DC911624.1|DC911624
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGAAT-CAAGGATCAA                         ATTTATGACATTTTCCAGCT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCT
EST: gi|100352544|gb|BY945325.1|BY945325
EST:     CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCA-GGNATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTTCA-GTTTTGTGTG
genomic: CGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGG-ATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTT-CAAGTTG-GTGTG
EST: gi|100416817|gb|BY993103.1|BY993103
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTC
EST: gi|208379703|gb|DC903758.1|DC903758
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTC
EST: gi|100402291|gb|BY991038.1|BY991038
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTTCTTCCC-AGAAGCTTCAAGTTGGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTT-CTTCCCCAGAAGCTTCAAGTTGGTGTGTT
EST: gi|100395059|gb|BY953586.1|BY953586
EST:     TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAG                         ATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCNAAGT-GGTGTGTT
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTC-AAGTTGGTGTGTT
EST: gi|208350668|gb|DC913954.1|DC913954
EST:     TCGTGCTGGACGAANCTGACGAAATGCTCTCGAGGGGAT-CAAGGATCAA                         ATT-ATGACATTT-CCANCTTCTTCCC
genomic: TCGTGCTGGACGAAGCTGACGAAATGCTCTCGAGGGGATTCAAGGATCAGgtgtgtaaag ... agttgtgcagATTTATGACATTTTCCAGCTTCTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgtgaaagttggtgctgcttattgacttaggtcagattgggtgagttgtgcagATTTATGACATTTTCCAGCTTCTTCCCCAGAAGCTTCAAGTTGGTGTGTTCTCTGCCACCATGCCACCCGAAGCTCTTGAAATCACCAGAAAATTCATGA
                     tattgac  putative branch site (score: 2)
                    ttattga  TA-rich tract