1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtctgcatccccccctccctgctgtgtgtgtttgtttttgtgtgtagatctgtggtggttaatgttgtctattatgttatgatttcaatacattaaaataagaattttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGATCGGTCAGGCATTGAAGTGGCAACAACATCAAG
species | Physcomitrella patens |
transcript | PP1S136_176V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGG CTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGAEST: gi|100370554|gb|BY985466.1|BY985466
genomic: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGGgtctgcatcc ... ttttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGA
EST: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGG CTCTCTCTGTCGAG-TGCACCGTTGGTACCCCCATCCAGACTGATGGCTTTEST: gi|100416629|gb|BY975479.1|BY975479
genomic: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGGgtctgcatcc ... ttttgtgcagCTCTCTCTGTCGAGGT-CACCGTTG-TACCCCCATCCAGACTGATGGCTTT
EST: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGG CTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGAEST: gi|100408381|gb|BY974137.1|BY974137
genomic: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGGgtctgcatcc ... ttttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGA
EST: GCTTATCANGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGG CTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGA
genomic: GCTTATCAAGAATCATCCAAGGAGAAAAGACGCGCTCAAATTGCTCAGGgtctgcatcc ... ttttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGA
taatgttgtctattatgttatgatttcaatacattaaaataagaattttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGATCGGTCAGGCATTGAAGTGGCAACAACATCAAG
ggttaat putative branch site (score: 2)
tattatgttatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcatccccccctccctgctgtgtgtgtttgtttttgtgtgtagatctgtggtggttaatgttgtctattatgttatgatttcaatacattaaaataagaattttgtgcagCTCTCTCTGTCGAGGTCACCGTTGTACCCCCATCCAGACTGATGGCTTTGATCGGTCAGGCATTGAAGTGGCAACAACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG