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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggagtttgaactgaaatatatgatgtggttaacgtttgtactactatcagttatcagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG

Basic information

species Physcomitrella patens
transcript PP1S136_175V6.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os03g38000.2 (Oryza sativa), 3'ss of exon 2
atggagtttgaactgaaatatatgatgtggttaacgtttgtac-tactatcagttat-cagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
        |||  |    | ||  ||     | || | || |  |   ||   || | ||   || |   | | |||  || || |  |    |   | ||||| || ||||||||||||||  | ||     | ||||||||||||||||||||||| || || ||||| ||||| ||    || ||||| || |||||||
-------gtgagttcct-tgtacaataaaaattacatgtgcaaatgtgatattttgtacacacattaaa-gttgaactgatccctttatt---cttattcagGTCATTGTAAGTGGAAAGCTCAGGGCCCAAAGAGCCAAGTCCATGAAGTTCAAGGATGGTTACATGATCTCATCTGGTCAGCCAGTCAATGAGTACATTG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: LOC_Os07g41750.1 (Oryza sativa), 3'ss of exon 4
atggagtttgaactgaaatatatgatgtg-gttaacgtttgtactactatcagttatcagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
  | | | | |    |||   | | |||  | |   | ||| | | ||          |  |||   ||| |   | | |||  | ||       || ||||| || || ||||| |||||  | ||    ||||| || |||||||||||||||||||| || |||||||| || ||    ||||| |||   || ||||
--gtactctcatgcaaaacgaaagctgtatggttttgcttggattcctgct-----ctatttatgtattgatttgc-tgttctttggt-------ttacagGTTATTGTGAGTGGGAAGCTTAGGGCTCAGCGTGCTAAATCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTTATCCTGTTAACTTGTATATTG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G099352_T02 (Zea mays), 3'ss of exon 1
atggagtttgaactgaaatatatgatgtggttaacgtttgtactactatcagttatcagctatcagttgctcaacgtattccatcg-tgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
                    | |    | ||      |   |  |   ||| || | ||  |     | ||| ||    |   ||  | | |   |  ||||||||||| |||||||||||  | ||     | ||||||||||||||||||||||| ||||| ||||| ||||| ||    || || ||||| |||||||
---------------gtgagtgttcctttgtacttcctgagaacatgttcatttgttagtgaatgcat-ctcgacagcctttgtctcttttaaaataacagGTGATCGTGAGTGGAAAGCTCAGGGCCCAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAACGAGTACATTG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GRMZM2G074300_T03 (Zea mays), 3'ss of exon 2
atggagtttgaactgaaatatatgatgtggttaacgtttgtactactatcagttatcagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
     ||| |  ||    |  |  ||| ||     || ||| |   |     | ||  |  |     ||   |  |  ||   |  | | |    | ||||| || || |||||||||||  | ||     | ||||||||||||||||||||||| ||||| ||||| ||||| ||    || || || || ||||| |
-----gttagtgctcctgtgcactatgagg-----gtctgttcattttctgatgattggtgaatgcatgtcgacagccttatttgttctaa----tacagGTCATTGTGAGTGGAAAGCTCAGGGCTCAAAGAGCCAAGTCCATGAAGTTCAAGGATGGCTACATGATCTCATCTGGTCAGCCAGTGAATGAGTACATCG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA16G33240.1 (Glycine max), 3'ss of exon 4
atggagtttgaactgaaatatatgatgtggttaacgtttgtactactatcagttatcagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
                  | | |  | |||    |  || |  || | |      | |  ||   |||  |    ||| |   | || ||||    |||||| || || |||||||| ||| | ||     | |||||||||||||| |||||||| || ||||||||||| || |||   || ||||| ||||||||||
-----------------gtttgttttatggaggcctattattgtattgtt-----ttatgtaatggtttttt--tgtaatt-gttgtttgacttgagcagGTCATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAGTCCATGAAATTCAAGGATGGATATATGATTTCTTCTGGACAACCAGTCAAGGATTACATTG

upper sequence: PP1S136_175V6.1 (Physcomitrella patens), 3'ss of exon 4
lower sequence: GLYMA09G28440.1 (Glycine max), 3'ss of exon 4
atggagtttgaactgaaatatatgatgtggttaacg--tttgtactactatcagttatcagctatcagttgctcaacgtattccatcgtgtgacggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG
                         | || || | |   |  || || | |      | |  ||   |||  |    ||| |   | || ||||    |||||| || || |||||||| ||| | ||     | |||||||||||||| |||||||| || || |||||||| || |||   |||||||| ||||||||||
------------------------gtttgttttatggactcctaatattgtattgctttatgtaatggtt--tggttgtaatt-gttgtttgacttgagcagGTCATTGTTAGTGGAAAACTGAGAGCTCAGAGAGCCAAGTCCATGAAATTCAAGGATGGATACATGATTTCTTCTGGACAACCTGTCAAGGATTACATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18341601|gb|BJ173636.1|BJ173636
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162238741|gb|FC419052.1|FC419052
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|100353473|gb|BY964824.1|BY964824
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18328942|gb|BJ160948.1|BJ160948
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162265655|gb|FC441618.1|FC441618
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|37823786|gb|BJ581852.1|BJ581852
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162258820|gb|FC434827.1|FC434827
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18328002|gb|BJ160006.1|BJ160006
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162267778|gb|FC443768.1|FC443768
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162258819|gb|FC434826.1|FC434826
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|37824033|gb|BJ582099.1|BJ582099
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18341560|gb|BJ173595.1|BJ173595
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|37830179|gb|BJ588191.1|BJ588191
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18344831|gb|BJ176872.1|BJ176872
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTG
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTG
EST: gi|162280359|gb|FC456064.1|FC456064
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162265654|gb|FC441617.1|FC441617
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18332204|gb|BJ164217.1|BJ164217
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|37821437|gb|BJ579503.1|BJ579503
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|22132029|gb|BQ826942.1|BQ826942
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18332244|gb|BJ164257.1|BJ164257
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18344586|gb|BJ176627.1|BJ176627
EST:     CTATGGAAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAG
genomic: CTATGGA-GTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAG
EST: gi|67719851|gb|BJ970110.1|BJ970110
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162280358|gb|FC456063.1|FC456063
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|37827462|gb|BJ585474.1|BJ585474
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18337153|gb|BJ169177.1|BJ169177
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|100444204|gb|BY964102.1|BY964102
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCNAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGGTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|18336232|gb|BJ168254.1|BJ168254
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|208375019|gb|DC956415.1|DC956415
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|67728112|gb|BJ978371.1|BJ978371
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|162238740|gb|FC419051.1|FC419051
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
EST: gi|208386351|gb|DC932847.1|DC932847
EST:     GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAG                         GTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC
genomic: GCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 63

GGCTTGCTATGGAGTGCTGAGGTTCATCATGGAGAGCGGTGCCAAGGGTTGTGAGgtactgtgac ... acggttgcagGTGATCGTAAGTGGAAAGCTGCGCGCAGCTCGTGCCAAGTCCATGAAGTTCAAGGACGGCTATATGATTTCATCAGGAAGCCCTGTCAACGATTACATTG




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