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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catcgttttattttctatacaggtcacctggttctatacgtgagcagtttgtaacgcgttttcttatcattttaactagccgtcttttctgttggtgcagGAAAGAGAGGAGGCCAAGAAGTTGTTTGCAACTGAAAATGGTCCACCCAGCAAAGCACTTCCTCCACCTCCTGCAAAAACCTTTATACCTGGGGAAATTC

Basic information

species Physcomitrella patens
transcript PP1S134_26V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162272667|gb|FC448293.1|FC448293
EST:     ACAAGCTACCCAAGCTTCGACTCATTGATTTTAAAAAGGTTAAGTTGAAG                         GAAAGAGAGGAGGCCAAGAAGTTGTTTGCAACTGAAAATGGTCCACCCAGC
genomic: ACAAGCTACCCAAGCTTCGACTCATTGATTTTAAAAAGGTTAAGTTGAAGgtacatacgg ... gttggtgcagGAAAGAGAGGAGGCCAAGAAGTTGTTTGCAACTGAAAATGGTCCACCCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttgtaacgcgttttcttatcattttaactagccgtcttttctgttggtgcagGAAAGAGAGGAGGCCAAGAAGTTGTTTGCAACTGAAAATGGTCCACCCAGCAAAGCACTTCCTCCACCTCCTGCAAAAACCTTTATACCTGGGGAAATTC
                        ttttaac  putative branch site (score: 2)
                                  ccgtcttttctgtt  putative PPT
             ttttcttatcatttta  TA-rich tract