1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gaaataaaatctgatagagtggttttattcattcgcaaccgattctataaacgttgcaagattattttctgacgagtttttccttctaatttttcttcagATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGGCTGTGTCCCGGTATTAACACTGTAATTCGTGAGATTGTGTGTGGTCTAT
species | Physcomitrella patens |
transcript | PP1S131_40V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAG ATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGGEST: gi|100386878|gb|BY988147.1|BY988147
genomic: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAGgtactcaact ... ttttcttcagATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGG
EST: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAG ATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGGEST: gi|100367264|gb|BY984866.1|BY984866
genomic: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAGgtactcaact ... ttttcttcagATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGG
EST: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAG ATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGG
genomic: ACGACGTCGGACATGGTATCCACTTCAGACGTGCTGGTCCACGAGACCAGgtactcaact ... ttttcttcagATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGG
tataaacgttgcaagattattttctgacgagtttttccttctaatttttcttcagATATACTTCAAACCAGAGGAAGTTAGAGCATGTATTGTTACTTGCGGGGGGCTGTGTCCCGGTATTAACACTGTAATTCGTGAGATTGTGTGTGGTCTAT
ttctaat putative branch site (score: 1)
tttttccttctaattt CT-rich tract
ttctaatttttctt TA-rich tract