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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgcgatagctttgctgctctccttgggttttatatgcagcaactcttagctgtgctgatgcgcattgagcactcttttgcctccaaccgtagatgacgaatgaattgaacacatattcgactttaaaagtaacaagaactgaatattggtctgtgttgttgggagcagGTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG

Basic information

species Physcomitrella patens
transcript PP1S130_248V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162269342|gb|FC445847.1|FC445847
EST:     GGGGAGGCGAGAAATCTTTCAATCGTCTCATGCGTTACATTCATCCCCAG                         GTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGC
genomic: GGGGAGGCGAGAAATCTTTCAATCGTCTCATGCGTTACATTCATCCCCAGgtatgtcgcg ... ttgggagcagGTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGC
EST: gi|162156617|gb|FC333265.1|FC333265
EST:     GGGGAGGCGAGAAATCTTTCAATCGTCTCATGCGTTACATTCATCCCCAG                         GTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGC
genomic: GGGGAGGCGAGAAATCTTTCAATCGTCTCATGCGTTACATTCATCCCCAGgtatgtcgcg ... ttgggagcagGTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcgactttaaaagtaacaagaactgaatattggtctgtgttgttgggagcagGTGAAGTTGATCGATTTCTCTCCAGGAGAAAAGTTTATGGTGACGTACAGCAGCCATGAGCCCAGCAGTCATAGAGATACGCAG
             aagtaac  putative branch site (score: 2)
        tttaaaagtaacaa  TA-rich tract