1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataattcttcaaaggtttccttggtgctgagaaacacagatttctaaattgaatgttgacattatgacggcacacggtctgacaaagttttatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGGAGCGCGGAAATGATGTCATTGTTATGCTAGTTGGGAATAAGACCGATCT
species | Physcomitrella patens |
transcript | PP1S12_267V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCNA ATCGGCAATCATTCCTTAATACAGCTCGTTGGGEST: gi|100445813|gb|CJ970112.1|CJ970112
genomic: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCAAgtgagtcttg ... tatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGG
EST: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCAA ATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGGEST: gi|208387491|gb|DC933354.1|DC933354
genomic: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCAAgtgagtcttg ... tatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGG
EST: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCAA ATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAAANGTGCGAACGG
genomic: CAGCTATATCCGTGATTCATCTGTTGCGGTGATCGTCTATGACGTGTCAAgtgagtcttg ... tatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGG
aaattgaatgttgacattatgacggcacacggtctgacaaagttttatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGGAGCGCGGAAATGATGTCATTGTTATGCTAGTTGGGAATAAGACCGATCT
aaagttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattcttcaaaggtttccttggtgctgagaaacacagatttctaaattgaatgttgacattatgacggcacacggtctgacaaagttttatggaacagATCGGCAATCATTCCTTAATACAGCTCGTTGGGTGGAAGAGGTGCGAACGGAGCGCGGAAATGATGTCATTGTTATGCTAGTTGGGAATAAGACCGATCT
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