1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatcctgtcgagactgtggacctccatcgacatagcccaactgccctcatcgttttttgcaactctcttcatttttctgatgtgcaattcatttcagttgggggcttttgaatcatccatctcatactcatcctcttcctgaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATTTCACGAGCGACGAAGCAAGCACCTCATGCCGAGGATCTCACGTCGGTA
species | Physcomitrella patens |
transcript | PP1S123_99V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|18332597|gb|BJ164610.1|BJ164610
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|67697862|gb|BJ958095.1|BJ958095
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|208355342|gb|DC949836.1|DC949836
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|162180587|gb|FC356944.1|FC356944
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|37851332|gb|BJ609340.1|BJ609340
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|37842891|gb|BJ600899.1|BJ600899
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATEST: gi|208361876|gb|DC953926.1|DC953926
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
EST: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTG AGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
genomic: CGAGTACAGTCGGCAGCTGTTTCTGGAGAATCCTCGATGGCCTGTCGTTGgtaaatcctg ... gaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATAT
agttgggggcttttgaatcatccatctcatactcatcctcttcctgaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATTTCACGAGCGACGAAGCAAGCACCTCATGCCGAGGATCTCACGTCGGTA
ctcatcctcttcctg CT-rich tract
ttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcctgtcgagactgtggacctccatcgacatagcccaactgccctcatcgttttttgcaactctcttcatttttctgatgtgcaattcatttcagttgggggcttttgaatcatccatctcatactcatcctcttcctgaaattgcagAGGTAACTGGGAAGGCGATTGAGGAGACGGCGGCGGTGATCCTGAGGATATTTCACGAGCGACGAAGCAAGCACCTCATGCCGAGGATCTCACGTCGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT