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gtacgatcactgggccctcatgttcaaactgttgaggacgtggtttatttatttatatattactcattcaatcttaataatttctgccgtcaatagcacattccttgggtagttgaaaaatctactattgcccgtatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCAAGTGCAAAGCTACCTTGGAGCTCACGCA
species | Physcomitrella patens |
transcript | PP1S120_79V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67692817|gb|BJ953050.1|BJ953050
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|37821833|gb|BJ579899.1|BJ579899
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67694462|gb|BJ954695.1|BJ954695
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67574192|gb|BJ947016.1|BJ947016
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|162210552|gb|FC386848.1|FC386848
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67569549|gb|BJ942373.1|BJ942373
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|162221907|gb|FC398175.1|FC398175
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|162227422|gb|FC403156.1|FC403156
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|162266890|gb|FC443004.1|FC443004
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67691738|gb|BJ951971.1|BJ951971
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GCTTGATTTTTGACGAGNCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCEST: gi|67697592|gb|BJ957825.1|BJ957825
genomic: GCTTGA-TTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
EST: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAG AGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
genomic: GGCTTGATTTTGACGAGGCCAAATTCAGCTTGTACTTCCTGGGATATGAGgtacgatcac ... tatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTC
tcaatagcacattccttgggtagttgaaaaatctactattgcccgtatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCAAGTGCAAAGCTACCTTGGAGCTCACGCA
tatttttc CT-rich tract
aaaaatctactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatcactgggccctcatgttcaaactgttgaggacgtggtttatttatttatatattactcattcaatcttaataatttctgccgtcaatagcacattccttgggtagttgaaaaatctactattgcccgtatttttcagAGTCCGGAAACCATCCCCAACGATACAGCAGAAAAAACTGCTTTCTTATTCAAGTGCAAAGCTACCTTGGAGCTCACGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA