1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatattatgttgcaagcgactcatgggctaggaataccttgctctttctacgcgtacttagctgaatcaccatcttttaaatctagtgatctatcgcatctgctcaaggcttgtgcgtagcttagagctgttgtttaactaagtccctctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATCGCATCGAACTGCTGGTGGACAAGACATCCACCATTCAAGACAATACCT
species | Physcomitrella patens |
transcript | PP1S115_125V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCCAAATGCAGATACGATAANCAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|37842940|gb|BJ600948.1|BJ600948
genomic: AATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|100393349|gb|BY989833.1|BY989833
genomic: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: GCAATCCAAATGCAGATACGATAAACAGATTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|162274387|gb|FC450414.1|FC450414
genomic: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: GCAATCCAAATGCAGATTCGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|37850241|gb|BJ608249.1|BJ608249
genomic: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: AATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|162170465|gb|FC347637.1|FC347637
genomic: AATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: ACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|37852406|gb|BJ610414.1|BJ610414
genomic: ACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: AATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|208361290|gb|DC930329.1|DC930329
genomic: AATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|37845521|gb|BJ603529.1|BJ603529
genomic: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|18335867|gb|BJ167888.1|BJ167888
genomic: GCAATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: ATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATEST: gi|7207413|gb|AW561415.1|AW561415
genomic: ATCCAAATGCAGATACGATAAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
EST: AAACAGAGTGAAAGGGGAAATAGCAGAG GTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
genomic: AAACAGAGTGAAAGGGGAAATAGCAGAGgtatattatg ... tctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGAT
ctcaaggcttgtgcgtagcttagagctgttgtttaactaagtccctctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATCGCATCGAACTGCTGGTGGACAAGACATCCACCATTCAAGACAATACCT
gtttaac putative branch site (score: 3)
tccctctgc putative PPT
tttaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattatgttgcaagcgactcatgggctaggaataccttgctctttctacgcgtacttagctgaatcaccatcttttaaatctagtgatctatcgcatctgctcaaggcttgtgcgtagcttagagctgttgtttaactaagtccctctgcatcagGTTCGGGCTGTCATGGTGGAGAATATCGATAAAGTGCTGGAGAGAGGTGATCGCATCGAACTGCTGGTGGACAAGACATCCACCATTCAAGACAATACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA