1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgtagtgtgattctcttattacatgaatgtgtgattgggatagagctgatatcgaaacaatttccttttattacaatccttgtgtacgtcaatgccctttctcttagcatcttgtgtgaattcaacttcgtctaatagtagtatttctctcagGAGATGCAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGGGTGATTCCCAAAATTAAAGCAGCATCTTTTGAGCGCATTCTTTTCCGAG
species | Physcomitrella patens |
transcript | PP1S107_75V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTCCTCAATTGGAGAAGCTATTGATCGCCCACTTCTACAAGAACAG GAGATGCAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGGEST: gi|162161442|gb|FC336816.1|FC336816
genomic: ATGGTTCCTCAATTGGAGAAGCTATTGATCGCCCACTTCTACAAGAACAGgtgtagtgtg ... tttctctcagGAGATGCAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGG
EST: ATGGTTCCTCAATTGGAGAAGCTATTGATCGCCCACTTCTAC----A-A- GA-A--CAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGG
genomic: ATGGTTCCTCAATTGGAGAAGCTATTGATCGCCCACTTCTACAAGAACAGgtgtagtgtg ... tttctctcagGAGATGCAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGG
ttctcttagcatcttgtgtgaattcaacttcgtctaatagtagtatttctctcagGAGATGCAGACCGAGCCATCAAAGCAAGCTAGGTTGGGCTTTATTACAGGGGTGATTCCCAAAATTAAAGCAGCATCTTTTGAGCGCATTCTTTTCCGAG
gtctaat putative branch site (score: 4)
tatttctctc putative PPT
taatagtagtattt TA-rich tract